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MK448703.1__QBX15704.1__Javan207_0018__00018

Bact-Vir

MK448703.1__QBX15704.1__Javan207_0018__00018

Identity

Accession:
MK448703 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.72 52.0 4.68e-01 100.0% 55.1%
1z5hA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.71 47.0 4.32e-01 98.2% 53.4%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.37e-01 98.2% 74.2%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.70 49.0 4.58e-01 100.0% 59.2%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 44.0 3.35e-01 100.0% 27.5%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.05e-01 96.4% 82.7%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.65 48.0 5.06e-01 100.0% 92.0%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 42.0 2.98e-01 100.0% 20.8%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.63 44.0 3.32e-01 94.6% 28.4%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.62 46.0 4.25e-01 100.0% 61.8%
1zx8A01 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.61 52.0 4.07e-01 96.4% 99.2%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.60 49.0 4.34e-01 100.0% 65.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 52.0 3.74e-01 100.0% 48.5%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 44.0 4.32e-01 100.0% 78.7%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 49.0 4.06e-01 100.0% 100.0%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.57 42.0 3.13e-01 80.4% 97.3%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.81e-01 100.0% 45.5%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.85e-01 82.1% 94.3%
6hxiA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.55 43.0 3.04e-01 98.2% 25.6%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 38.0 2.62e-01 75.0% 37.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 43.0 3.79e-01 100.0% 57.6%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 39.0 2.52e-01 100.0% 14.0%
3ttcA01 3.90.870.30 Alpha Beta › Alpha-Beta Complex › DHBP synthase › 0.54 44.0 3.02e-01 92.9% 68.8%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 44.0 3.85e-01 100.0% 59.6%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 45.0 3.16e-01 100.0% 35.6%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 43.0 3.96e-01 96.4% 92.4%
4oi3A00 3.30.70.3090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer 0.52 44.0 3.96e-01 98.2% 98.8%
3zt9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 40.0 2.83e-01 100.0% 25.5%
5tdeA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 43.0 3.90e-01 100.0% 69.5%
1i5pA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 45.0 3.29e-01 100.0% 38.0%
4h32A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.51 36.0 2.47e-01 75.0% 89.5%
1sb7A02 3.30.2340.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain 0.51 39.0 3.07e-01 100.0% 36.8%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.51 40.0 2.95e-01 85.7% 52.3%
6jkvA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 41.0 2.86e-01 100.0% 30.9%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 44.0 3.35e-01 100.0% 92.1%
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 38.0 2.43e-01 82.1% 70.4%
7cboA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.51 32.0 2.65e-01 87.5% 31.2%
3lvuB00 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.51 42.0 2.81e-01 100.0% 99.2%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.50 35.0 2.81e-01 75.0% 86.1%
4pysA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.50 38.0 2.99e-01 82.1% 72.7%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.51e-01 100.0% 52.9%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.50 43.0 3.36e-01 96.4% 95.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 78.0 7.42e-01 94.6% 100.0%
3281602 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.86 64.0 6.82e-01 100.0% 91.7%
3218303 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.80 49.0 5.41e-01 100.0% 77.8%
4931929 821.1.1.14 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.75 52.0 4.44e-01 100.0% 45.6%
3412052 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.71 48.0 4.71e-01 100.0% 66.7%
4461643 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.70 47.0 4.61e-01 98.2% 65.0%
4460652 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.69 45.0 2.83e-01 80.4% 12.5%
5000654 247.1.1.30 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.68 45.0 2.79e-01 80.4% 12.3%
5059796 4326.1.1.0 a+b two layers › ERH-like › ERH-like › ERH-like 0.67 47.0 4.47e-01 100.0% 60.9%
3404255 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.67 45.0 4.69e-01 100.0% 80.0%
4488855 275.1.1.5 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.66 61.0 5.23e-01 100.0% 100.0%
4053783 247.1.1.33 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Anti-Pycsar_Apyc1 0.66 44.0 2.77e-01 82.1% 13.1%
4068562 247.1.1.29 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 0.66 43.0 2.68e-01 80.4% 12.5%
3285086 3268.1.1.0 a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.66 46.0 4.18e-01 73.2% 96.0%
3879163 247.1.1.31 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 0.66 47.0 2.64e-01 80.4% 6.2%
3389539 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.65 44.0 4.70e-01 100.0% 88.9%
4228966 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.64 55.0 4.48e-01 100.0% 95.5%
4458441 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.63 48.0 3.60e-01 100.0% 31.6%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.62 46.0 4.47e-01 100.0% 70.8%
3666673 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 56.0 5.07e-01 100.0% 84.0%
3254631 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.62 48.0 4.63e-01 87.5% 95.4%
3435593 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.62 42.0 3.43e-01 71.4% 54.5%
4024428 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.61 53.0 3.33e-01 96.4% 30.9%
3653291 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 41.0 4.03e-01 98.2% 65.0%
4655745 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.61 52.0 4.39e-01 100.0% 98.0%
3781851 5050.1.1.32 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.60 42.0 2.75e-01 100.0% 16.7%
3907235 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.60 42.0 2.85e-01 94.6% 18.7%
3267853 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.60 41.0 2.82e-01 94.6% 18.6%
4994897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.29e-01 76.8% 56.3%
3914736 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.60 46.0 4.44e-01 87.5% 96.9%
3252861 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.58 42.0 2.87e-01 96.4% 20.5%
3205036 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 40.0 2.68e-01 94.6% 17.1%
3911194 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 45.0 4.10e-01 91.1% 85.0%
3988217 241.12.1.0 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.57 49.0 3.35e-01 98.2% 32.5%
4978525 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.56 40.0 2.65e-01 75.0% 83.1%
3231588 382.1.1.6 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.56 48.0 4.48e-01 100.0% 80.8%
3510040 3115.3.1.2 a+b two layers › GP2-like › P56 › P56 › DUF2922 0.55 47.0 4.28e-01 100.0% 75.0%
4358744 2498.2.1.4 mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glycohydro_20b2 0.55 39.0 2.79e-01 75.0% 68.5%
3260247 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 45.0 4.09e-01 100.0% 92.8%
3975385 3012.1.1.4 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.55 43.0 3.58e-01 89.3% 92.4%
3560843 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 44.0 3.63e-01 100.0% 48.2%
4071149 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.54 42.0 3.53e-01 89.3% 92.4%
3944463 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.54 42.0 3.53e-01 89.3% 92.4%
4931464 822.3.1.0 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 0.53 42.0 4.00e-01 98.2% 76.0%
3310614 2008.1.1.146 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N 0.53 40.0 2.47e-01 82.1% 31.6%
4981961 101.1.2.819 alpha arrays › HTH › HTH › winged helix domain › PF27231 0.53 44.0 3.19e-01 92.9% 71.2%
3934699 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 44.0 3.04e-01 98.2% 26.5%
4947457 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.51 40.0 2.51e-01 87.5% 19.0%
3300493 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.51 43.0 3.10e-01 100.0% 76.7%
3798336 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.51 42.0 3.96e-01 94.6% 92.9%
3879988 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 40.0 2.76e-01 92.9% 22.8%
3630093 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 45.0 4.13e-01 100.0% 78.7%
3164474 3012.1.1.4 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.51 45.0 3.61e-01 98.2% 57.1%
3108097 3382.1.1.0 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 0.50 37.0 2.40e-01 80.4% 44.2%