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MK448706.1__QBX15890.1__Javan221_0032__00021

Bact-Vir

MK448706.1__QBX15890.1__Javan221_0032__00021

Identity

Accession:
MK448706 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan221

TaxID: 2548053

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-107
PDB
Domain cluster: rep: NC_031929.1__YP_009323507.1__BOW98_gp35__00035__D62-160
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 34.0 3.50e-01 85.8% 58.1%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 28.0 3.46e-01 99.1% 82.5%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 42.0 4.49e-01 100.0% 96.7%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 34.0 3.77e-01 77.4% 78.8%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 36.0 3.29e-01 74.5% 51.1%
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.53 37.0 3.34e-01 71.7% 90.4%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.52 23.0 2.83e-01 91.5% 62.1%
1lqlA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 39.0 3.97e-01 86.8% 83.5%
3tlqA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 37.0 2.93e-01 97.2% 34.3%
2yzcA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.50 36.0 2.72e-01 76.4% 58.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025179 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 49.0 4.01e-01 97.2% 79.5%
3609229 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 48.0 3.91e-01 91.5% 82.1%
3622962 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.56 49.0 3.71e-01 95.3% 72.5%
3586666 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.56 40.0 3.23e-01 75.5% 67.0%
4984373 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.55 40.0 3.28e-01 97.2% 39.5%
5002496 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.32e-01 77.4% 97.6%
3490572 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 44.0 3.67e-01 95.3% 65.3%
1051116 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.51 37.0 2.93e-01 97.2% 34.3%
None — 0.51 46.0 3.13e-01 100.0% 53.8%
3600178 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 44.0 3.67e-01 96.2% 95.3%
4455320 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.51 42.0 2.86e-01 93.4% 92.5%
5071368 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.50 39.0 3.84e-01 100.0% 77.4%