Back to structures

MK448707.1__QBX15913.1__Javan227_0003__00003

Bact-Vir

MK448707.1__QBX15913.1__Javan227_0003__00003

Identity

Accession:
MK448707 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-51
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.82 63.0 6.55e-01 100.0% 91.3%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 71.0 6.62e-01 100.0% 87.3%
1hh2P02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 67.0 6.24e-01 94.0% 92.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 49.0 4.60e-01 100.0% 51.7%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 63.0 5.31e-01 92.0% 53.0%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.79 63.0 5.56e-01 88.0% 61.6%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 67.0 6.24e-01 100.0% 87.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.78 50.0 3.91e-01 72.0% 32.4%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 66.0 6.30e-01 100.0% 89.8%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 49.0 4.46e-01 100.0% 50.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.76 47.0 3.74e-01 100.0% 31.6%
1go3E01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 66.0 5.41e-01 100.0% 84.0%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 61.0 5.39e-01 100.0% 62.2%
1y14D02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 63.0 5.33e-01 100.0% 94.3%
4mtnA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 61.0 5.66e-01 94.0% 92.1%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 58.0 5.61e-01 96.0% 77.6%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 62.0 5.16e-01 100.0% 91.2%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 60.0 4.83e-01 100.0% 60.4%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 60.0 5.38e-01 98.0% 73.2%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.68 53.0 5.13e-01 100.0% 75.9%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 42.0 4.14e-01 100.0% 56.4%
3mxnB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 58.0 4.37e-01 100.0% 48.1%
4da2A01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 56.0 4.96e-01 100.0% 73.4%
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 57.0 5.29e-01 98.0% 90.5%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 43.0 2.92e-01 100.0% 19.8%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 55.0 4.50e-01 100.0% 58.6%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 40.0 3.81e-01 70.0% 50.0%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 55.0 5.08e-01 98.0% 87.9%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 54.0 5.06e-01 98.0% 87.7%
2a6hC05 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 57.0 4.97e-01 100.0% 72.0%
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.64 54.0 4.51e-01 100.0% 66.7%
1ckmA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 55.0 4.72e-01 100.0% 60.2%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 44.0 3.09e-01 76.0% 53.4%
1x9zA01 3.30.1540.20 Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain 0.63 53.0 4.39e-01 96.0% 81.7%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 42.0 3.56e-01 72.0% 41.7%
2jmcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.19e-01 92.0% 59.7%
1auuA00 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.58 47.0 4.58e-01 92.0% 83.6%
1pm3A00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.57 46.0 4.16e-01 90.0% 66.7%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 3.77e-01 98.0% 56.9%
1ub4C00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.56 41.0 3.69e-01 82.0% 57.3%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.55 47.0 3.56e-01 100.0% 50.7%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 45.0 3.27e-01 94.0% 35.9%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.54 38.0 2.81e-01 100.0% 27.5%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 39.0 2.93e-01 94.0% 30.6%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972486 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.90 80.0 7.79e-01 98.0% 92.7%
3222222 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.89 66.0 7.22e-01 84.0% 97.5%
4974921 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.87 67.0 5.89e-01 94.0% 58.6%
5044374 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.84 73.0 7.15e-01 98.0% 94.5%
3221707 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 76.0 6.53e-01 100.0% 96.0%
4975151 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 70.0 6.78e-01 94.0% 92.7%
4947996 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 72.0 7.02e-01 100.0% 92.7%
4946166 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 71.0 6.68e-01 100.0% 88.3%
5026953 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.80 72.0 5.33e-01 100.0% 92.5%
4406361 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.79 68.0 6.04e-01 94.0% 80.0%
4978946 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 69.0 6.53e-01 100.0% 83.3%
4678094 2.1.1.101 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › KfrB 0.78 66.0 5.08e-01 100.0% 42.5%
5004476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 48.0 4.39e-01 100.0% 47.7%
5017215 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 68.0 6.65e-01 100.0% 92.7%
4928381 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.77 50.0 4.34e-01 72.0% 45.2%
4027434 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 65.0 5.49e-01 98.0% 81.2%
3386763 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 66.0 6.07e-01 100.0% 83.1%
4952888 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 65.0 6.33e-01 100.0% 94.5%
3252914 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 64.0 5.49e-01 98.0% 82.5%
5074142 2.14.1.0 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like 0.73 59.0 5.26e-01 100.0% 61.3%
5023741 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 61.0 6.12e-01 100.0% 96.0%
4964608 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 49.0 3.85e-01 72.0% 100.0%
5056867 2.14.1.1 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.72 57.0 5.76e-01 100.0% 92.0%
5040273 4.6.1.4 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.71 53.0 4.61e-01 92.0% 53.3%
4376273 2.14.1.1 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.71 57.0 4.78e-01 100.0% 51.1%
4953042 2.14.1.1 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.71 60.0 5.17e-01 100.0% 60.0%
4992873 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 59.0 5.71e-01 100.0% 89.7%
4877512 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.70 55.0 5.34e-01 90.0% 78.6%
5058672 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 59.0 5.67e-01 98.0% 89.8%
4966867 4.6.1.4 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.69 52.0 4.44e-01 94.0% 50.0%
5034646 4.6.1.4 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.69 51.0 4.36e-01 92.0% 50.0%
5033076 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 57.0 5.56e-01 98.0% 89.1%
5080835 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 56.0 5.56e-01 98.0% 89.1%
3283610 3112.1.1.0 beta barrels › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 0.68 56.0 5.16e-01 92.0% 86.2%
3356732 2.1.1.67 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.68 57.0 4.45e-01 100.0% 53.3%
5051423 2.1.1.67 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.68 58.0 4.63e-01 100.0% 59.0%
5078697 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 58.0 5.55e-01 100.0% 86.7%
4441925 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 59.0 4.26e-01 100.0% 47.6%
4310351 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.66 60.0 5.34e-01 100.0% 75.7%
4316390 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.66 57.0 5.23e-01 96.0% 90.8%
4459871 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.66 59.0 5.13e-01 100.0% 72.0%
137535 2.1.1.59 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1 0.65 56.0 4.47e-01 100.0% 55.2%
4353811 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.65 58.0 5.20e-01 100.0% 75.7%
4098530 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.65 58.0 3.80e-01 100.0% 25.9%
4934385 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.65 44.0 2.95e-01 72.0% 66.8%
5062443 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 55.0 4.70e-01 100.0% 71.8%
4219215 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.64 55.0 4.85e-01 98.0% 77.3%
5082745 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 55.0 4.70e-01 100.0% 72.9%
4337382 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.63 54.0 4.79e-01 98.0% 77.3%
4995186 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.62 49.0 3.38e-01 98.0% 27.1%
4948357 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 52.0 4.45e-01 100.0% 69.0%
3596004 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 43.0 3.23e-01 100.0% 30.4%
4668024 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.60 50.0 3.37e-01 98.0% 26.5%
4238002 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.60 50.0 3.33e-01 96.0% 34.0%
1030947 4.1.1.114 beta barrels › SH3 › SH3 › SH3 › PSA_CBD 0.57 41.0 3.77e-01 98.0% 56.9%
4826054 11.1.1.19 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E2_glycop 0.57 47.0 3.53e-01 100.0% 66.9%
4960280 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.84e-01 100.0% 50.5%
3289995 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.75e-01 98.0% 52.7%
3382789 3080.1.1.2 a+b complex topology › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Vps62 0.56 45.0 3.30e-01 94.0% 36.5%
4000205 384.1.1.0 few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.56 41.0 4.14e-01 80.0% 96.0%
4034423 4.8.1.26 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 0.55 47.0 3.99e-01 100.0% 88.2%
3286555 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 3.69e-01 100.0% 84.5%
4998413 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 4.20e-01 100.0% 74.3%
5022340 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 4.11e-01 98.0% 75.7%
5016434 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 4.05e-01 100.0% 65.3%
3286598 2498.2.1.0 mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain 0.54 40.0 2.85e-01 84.0% 53.1%
3874132 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.54 46.0 3.58e-01 100.0% 43.5%
4982077 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.73e-01 98.0% 76.8%
5049640 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 3.91e-01 100.0% 68.4%
4027872 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.59e-01 100.0% 69.5%
D2 high residues 88-152
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05154.22 best TM2 57.0 2.50e-15 78.5% 94.1%