←Back to structures

MK448710.1__QBX16110.1__Javan233_0030__00030

Bact-Vir

MK448710.1__QBX16110.1__Javan233_0030__00030

Identity

Accession:
MK448710 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan233

TaxID: 2548059

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-99
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09643.16 best YopX 32.2 1.40e-07 100.0% 52.3%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.86 73.0 7.02e-01 97.0% 80.8%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 49.0 4.05e-01 83.3% 77.4%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 47.0 2.95e-01 77.3% 51.2%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 52.0 3.32e-01 90.9% 26.4%
3isxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.63 53.0 4.78e-01 90.9% 100.0%
1ckmA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.63 46.0 3.47e-01 77.3% 91.6%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.63 46.0 3.77e-01 81.8% 70.6%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 49.0 3.25e-01 90.9% 27.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.61 51.0 4.46e-01 90.9% 72.6%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 49.0 3.14e-01 90.9% 23.3%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.60 48.0 4.17e-01 90.9% 82.6%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 44.0 2.87e-01 78.8% 54.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.92e-01 87.9% 77.4%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.60 49.0 4.68e-01 97.0% 76.6%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 50.0 4.21e-01 92.4% 85.5%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 45.0 3.96e-01 84.8% 91.4%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.55e-01 80.3% 100.0%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 49.0 3.94e-01 98.5% 100.0%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.77e-01 80.3% 90.4%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 42.0 4.26e-01 75.8% 100.0%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 48.0 4.04e-01 93.9% 99.2%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.58 49.0 4.78e-01 100.0% 94.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.72e-01 92.4% 100.0%
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.58 39.0 3.81e-01 71.2% 83.8%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 4.38e-01 77.3% 95.0%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 40.0 3.29e-01 77.3% 53.6%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 47.0 3.70e-01 98.5% 96.2%
2w8mA00 3.40.1350.50 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif 0.56 47.0 3.56e-01 93.9% 86.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.24e-01 80.3% 86.8%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 47.0 3.80e-01 100.0% 99.3%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 4.16e-01 74.2% 100.0%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 47.0 4.23e-01 95.5% 75.6%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 46.0 4.53e-01 93.9% 98.6%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.54 39.0 3.64e-01 80.3% 63.6%
1f89A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.53 47.0 3.15e-01 100.0% 72.0%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.53 39.0 2.64e-01 81.8% 44.8%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.53 39.0 3.56e-01 80.3% 95.6%
3t9yA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 37.0 2.91e-01 72.7% 76.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.34e-01 90.9% 95.4%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.52 41.0 3.80e-01 89.4% 88.6%
3l48A01 2.60.40.2070 Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain 0.52 36.0 3.54e-01 98.5% 64.5%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 40.0 3.33e-01 92.4% 83.6%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 3.05e-01 83.3% 97.2%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.50 37.0 2.58e-01 80.3% 56.5%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 42.0 4.33e-01 100.0% 98.4%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 40.0 3.36e-01 93.9% 84.5%
1oruA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.50 42.0 3.19e-01 98.5% 63.0%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590122 4999.1.1.1 ↗ beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX 0.79 60.0 6.10e-01 80.3% 84.6%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 56.0 6.08e-01 95.5% 100.0%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.69 51.0 5.55e-01 89.4% 94.5%
3264806 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.45e-01 89.4% 100.0%
4516378 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 50.0 4.93e-01 87.9% 74.3%
4116754 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 44.0 5.12e-01 78.8% 100.0%
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.14e-01 100.0% 83.1%
3936442 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 50.0 4.35e-01 80.3% 83.0%
4665407 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 48.0 5.36e-01 86.4% 100.0%
3706916 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 3.52e-01 75.8% 86.9%
4022796 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 55.0 4.38e-01 97.0% 100.0%
4012945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.08e-01 87.9% 100.0%
3978624 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 54.0 4.29e-01 90.9% 49.2%
3511439 220.1.1.193 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_UBFD1_C 0.64 48.0 4.08e-01 81.8% 72.6%
4165723 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.63 49.0 5.02e-01 90.9% 86.2%
4026536 220.1.1.53 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.63 47.0 3.89e-01 81.8% 76.6%
3970136 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.62 50.0 4.35e-01 90.9% 83.8%
3537417 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 41.0 4.69e-01 77.3% 100.0%
4528695 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.62 43.0 3.16e-01 72.7% 28.0%
3614286 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 49.0 3.15e-01 90.9% 24.1%
4269649 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.61 49.0 4.20e-01 90.9% 80.0%
4627221 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.61 48.0 4.86e-01 89.4% 87.7%
3964438 11.1.1.404 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4390 0.61 50.0 3.78e-01 93.9% 81.1%
3706087 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 5.11e-01 87.9% 96.7%
4984134 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.60 51.0 4.90e-01 93.9% 98.7%
3188574 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.60 51.0 5.21e-01 98.5% 96.9%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.60 43.0 4.38e-01 77.3% 100.0%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.60 50.0 3.68e-01 90.9% 44.2%
3965099 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.60 48.0 4.20e-01 90.9% 81.9%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 49.0 4.45e-01 90.9% 82.0%
4427813 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 47.0 4.15e-01 90.9% 81.9%
3607725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 45.0 2.84e-01 84.8% 96.5%
5005974 304.51.1.6 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 0.59 46.0 3.32e-01 92.4% 77.4%
4589583 2008.1.1.191 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.59 46.0 3.55e-01 90.9% 69.9%
5041229 375.13.1.0 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.59 40.0 4.15e-01 71.2% 100.0%
3743299 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.59 43.0 3.76e-01 81.8% 61.8%
5010031 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.58 48.0 4.06e-01 92.4% 63.5%
3500033 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 38.0 4.26e-01 90.9% 90.0%
4119693 6064.1.1.0 ↗ few secondary structure elements › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 0.58 36.0 3.94e-01 77.3% 83.7%
3314636 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 43.0 3.19e-01 84.8% 79.0%
4273414 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 46.0 4.59e-01 89.4% 98.6%
4281020 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 49.0 4.35e-01 95.5% 73.7%
5011877 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.56 42.0 3.81e-01 80.3% 91.1%
3882808 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 48.0 4.66e-01 93.9% 84.0%
3292420 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 48.0 4.36e-01 93.9% 75.6%
4040812 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.56 44.0 4.04e-01 86.4% 95.5%
3492787 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.56 41.0 3.06e-01 80.3% 30.7%
4449615 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.55 44.0 4.02e-01 87.9% 95.6%
4336238 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.55 44.0 3.94e-01 92.4% 90.0%
3737176 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 43.0 4.01e-01 87.9% 88.2%
3485287 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 43.0 3.18e-01 90.9% 49.8%
3973553 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 47.0 4.65e-01 93.9% 98.6%
5045295 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.55 38.0 3.46e-01 71.2% 93.3%
4028185 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.55 37.0 4.19e-01 90.9% 94.0%
3509389 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 43.0 3.57e-01 90.9% 79.2%
3890187 6.1.1.8 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › AbfB 0.54 41.0 3.28e-01 89.4% 76.4%
3269927 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.54 46.0 4.00e-01 100.0% 97.2%
3204558 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.54 43.0 3.24e-01 89.4% 55.9%
4479376 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.54 42.0 3.69e-01 93.9% 77.4%
3278426 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.53 44.0 3.86e-01 100.0% 92.1%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 46.0 4.30e-01 100.0% 77.5%
3389763 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.53 45.0 3.99e-01 92.4% 94.7%
1924009 227.1.1.10 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.53 37.0 3.00e-01 74.2% 66.2%
3510937 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.53 45.0 3.84e-01 93.9% 95.2%
3601907 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.53 36.0 2.65e-01 71.2% 44.6%
3801134 3257.1.1.0 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain 0.53 39.0 2.89e-01 100.0% 29.4%
3738403 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.53 36.0 2.21e-01 72.7% 30.5%
3850571 1.1.7.114 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CATSPERB_head 0.51 44.0 4.07e-01 100.0% 95.6%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.70e-01 78.8% 87.1%
4029991 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.53e-01 87.9% 27.3%
3218510 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.50 36.0 3.21e-01 75.8% 54.1%