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MK448711.1__QBX16173.1__Javan235_0034__00034

Bact-Vir

MK448711.1__QBX16173.1__Javan235_0034__00034

Identity

Accession:
MK448711 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan235

TaxID: 2548060

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-79
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03592.22 best Terminase_2 35.1 2.60e-08 100.0% 57.6%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.87 63.0 7.21e-01 77.9% 98.3%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 48.0 3.74e-01 81.8% 47.1%
6zwwC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 45.0 3.50e-01 79.2% 49.7%
4cbgD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 42.0 3.36e-01 81.8% 59.0%
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 38.0 2.44e-01 77.9% 85.2%
3clqA04 3.90.1700.10 Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like 0.51 35.0 2.82e-01 72.7% 63.1%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.15e-01 74.0% 76.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3824313 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.59 44.0 3.37e-01 81.8% 47.7%
3598232 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 43.0 3.00e-01 84.4% 41.9%
5039984 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 37.0 2.94e-01 70.1% 42.4%
4239635 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 46.0 3.70e-01 97.4% 81.8%
4221024 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 3.53e-01 98.7% 82.4%
4176001 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.54 32.0 2.55e-01 72.7% 28.3%
4985036 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 46.0 3.66e-01 98.7% 78.8%
4970576 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.54 47.0 3.61e-01 98.7% 71.7%
4978512 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.54 40.0 2.90e-01 79.2% 48.0%
3334401 101.1.2.566 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.54 44.0 3.15e-01 96.1% 40.9%
4987009 3837.1.1.1 ↗ alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.53 37.0 3.05e-01 72.7% 70.7%
4645846 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.53 43.0 3.43e-01 90.9% 82.9%
3703529 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 41.0 2.91e-01 87.0% 42.6%
4646072 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 44.0 3.52e-01 96.1% 81.2%
3740289 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 39.0 2.71e-01 79.2% 65.2%
4478999 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 44.0 3.53e-01 100.0% 78.6%
5031648 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 42.0 3.42e-01 93.5% 83.0%
4947925 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 3.60e-01 98.7% 73.0%
4467359 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 44.0 3.52e-01 98.7% 75.3%
3670739 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.52 42.0 3.49e-01 96.1% 78.8%
4974744 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.52 43.0 3.40e-01 94.8% 77.7%
4403519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.27e-01 89.6% 83.5%
3873279 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.51 36.0 2.48e-01 72.7% 72.1%
4028488 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.51 35.0 2.91e-01 71.4% 81.4%
4943395 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.43e-01 98.7% 80.6%
3787728 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.50 30.0 3.17e-01 72.7% 64.3%