←Back to structures

MK448715.1__QBX16320.1__Javan247_0001__00047

Bact-Vir

MK448715.1__QBX16320.1__Javan247_0001__00047

Identity

Accession:
MK448715 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan247

TaxID: 2548069

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-159
PDB
Domain cluster: rep: ON453900.1__WAK79514.1__X__00090__D16-136
D2 high residues 165-244
PDB
Domain cluster: rep: MK448998.1__QBX31359.1__Javan636_0004__00059__D112-179
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08460.17 best SH3_5 54.8 1.10e-14 80.0% 95.6%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mk5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.91 85.0 7.03e-01 100.0% 64.1%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.90 85.0 7.82e-01 100.0% 81.8%
8b2gA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 60.0 6.90e-01 87.5% 100.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 61.0 6.51e-01 96.2% 88.6%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 56.0 6.50e-01 91.3% 100.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 59.0 6.48e-01 97.5% 93.9%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 60.0 6.54e-01 95.0% 98.5%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.74 61.0 6.44e-01 100.0% 98.6%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.99e-01 100.0% 86.0%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.76e-01 100.0% 86.4%
2fmyA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 46.0 3.87e-01 100.0% 39.7%
1ft9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 45.0 3.79e-01 100.0% 41.2%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.68 47.0 4.46e-01 100.0% 61.1%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 49.0 5.11e-01 97.5% 85.3%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 46.0 4.97e-01 96.2% 88.1%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 46.0 4.52e-01 100.0% 68.6%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 5.01e-01 96.2% 96.7%
5d1iA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 47.0 4.09e-01 100.0% 52.1%
5j3uA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 45.0 3.90e-01 100.0% 49.2%
1omiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 46.0 4.23e-01 100.0% 61.0%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 43.0 3.69e-01 100.0% 45.7%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 46.0 3.87e-01 100.0% 48.8%
3shrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 45.0 3.73e-01 100.0% 46.0%
7pzaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 44.0 3.85e-01 100.0% 50.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.25e-01 98.8% 84.6%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.59 49.0 4.39e-01 100.0% 64.1%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 4.23e-01 98.8% 84.7%
3dn7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 42.0 3.45e-01 100.0% 43.4%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.56 44.0 3.61e-01 83.7% 93.0%
4huzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 40.0 3.20e-01 76.2% 80.1%
1wapA00 2.60.40.50 Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like 0.54 37.0 3.93e-01 97.5% 82.4%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.98e-01 98.8% 96.6%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 37.0 3.35e-01 73.8% 90.4%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.70e-01 91.3% 86.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032300 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.98 94.0 8.99e-01 100.0% 90.0%
1905739 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.95 91.0 8.87e-01 100.0% 94.2%
4041535 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.93 89.0 8.56e-01 100.0% 92.0%
3988893 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.91 77.0 7.95e-01 90.0% 93.3%
1293364 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.91 85.0 7.03e-01 100.0% 64.1%
4550532 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.89 68.0 6.52e-01 97.5% 71.1%
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.85 63.0 6.77e-01 96.2% 88.6%
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 61.0 6.50e-01 93.8% 85.7%
4038705 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 62.0 6.88e-01 95.0% 95.4%
4127826 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.83 64.0 7.07e-01 98.8% 100.0%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.83 67.0 7.11e-01 96.2% 97.1%
1263580 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 61.0 6.27e-01 96.2% 82.7%
4009391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 66.0 6.64e-01 97.5% 85.0%
4358722 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 62.0 5.55e-01 97.5% 60.0%
3989970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 60.0 6.56e-01 97.5% 95.4%
3700744 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 74.0 6.76e-01 97.5% 97.0%
3579483 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.81 72.0 7.06e-01 95.0% 100.0%
3715828 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 70.0 7.02e-01 97.5% 92.5%
4427420 4.1.1.436 ↗ beta barrels › SH3 › SH3 › SH3 › PF29249 0.80 62.0 6.28e-01 97.5% 82.5%
4650162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 60.0 6.53e-01 100.0% 98.5%
3700747 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 73.0 6.97e-01 100.0% 93.3%
1673571 4.1.1.120 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_16 0.77 62.0 6.37e-01 100.0% 89.5%
4091533 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.76 60.0 6.34e-01 98.8% 95.7%
4291404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 60.0 6.16e-01 96.2% 88.0%
3969959 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 64.0 6.13e-01 100.0% 80.0%
4031199 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.75 62.0 6.27e-01 100.0% 88.7%
4616207 4.1.1.448 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5372 0.75 46.0 5.43e-01 93.8% 98.0%
3278325 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.74 54.0 6.09e-01 91.3% 100.0%
4340107 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 61.0 6.34e-01 95.0% 94.7%
4682138 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 60.0 6.19e-01 100.0% 94.7%
4063512 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.72 60.0 6.15e-01 100.0% 94.7%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.39e-01 98.8% 84.3%
3599257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.53e-01 100.0% 90.8%
315942 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.71 47.0 3.80e-01 100.0% 36.5%
4386715 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 66.0 6.49e-01 100.0% 95.3%
2325643 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.71 47.0 3.90e-01 100.0% 40.0%
3251170 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 53.0 5.66e-01 100.0% 90.0%
3594081 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 6.15e-01 97.5% 95.0%
4261760 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.70 62.0 5.88e-01 100.0% 81.1%
3490689 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 48.0 5.11e-01 98.8% 82.9%
3880325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 48.0 5.05e-01 96.2% 81.4%
4960540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.21e-01 98.8% 92.3%
5034724 4.1.1.482 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4314 0.65 43.0 4.92e-01 95.0% 100.0%
3612294 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.64 47.0 3.69e-01 100.0% 37.6%
2520628 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.64 46.0 4.12e-01 100.0% 55.0%
2519517 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.62 45.0 4.11e-01 100.0% 57.5%
3782128 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.61 48.0 3.81e-01 100.0% 44.0%
4614716 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.60 48.0 5.10e-01 96.2% 100.0%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 40.0 4.42e-01 100.0% 93.3%
5079902 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.57 42.0 3.67e-01 100.0% 51.7%
3498911 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 32.0 3.05e-01 83.7% 44.9%
3517193 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.57 40.0 3.72e-01 72.5% 89.0%
4055974 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.57 45.0 3.95e-01 100.0% 56.8%
3518895 391.1.2.9 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.57 40.0 3.70e-01 72.5% 75.0%
3187888 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.55 39.0 3.12e-01 100.0% 38.6%
5055694 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.95e-01 91.3% 80.9%
3500941 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.53 42.0 3.60e-01 100.0% 52.3%
4026222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 48.0 3.93e-01 100.0% 69.0%
3782999 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.53 43.0 3.64e-01 100.0% 51.7%
3385654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 46.0 4.00e-01 98.8% 96.7%
3736744 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.56e-01 93.8% 87.1%
3991921 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 40.0 3.67e-01 91.3% 87.7%