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MK448718.1__QBX16510.1__Javan253_0054__00054
Bact-VirMK448718.1__QBX16510.1__Javan253_0054__00054
Identity
- Accession:
- MK448718 ↗
- Kingdom:
- phage
Quality
95.5
mean pLDDT
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-31_95-142
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07761.17 best | DUF1617 | 53.9 | 3.00e-14 | 62.0% | 32.9% |
| PF07761.17 | DUF1617 | 24.6 | 3.30e-05 | 45.6% | 23.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qilB00 | 1.25.40.730 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 34.0 | 3.23e-01 | 84.8% | 46.4% |
D2
medium
residues 32-94
Domain cluster:
rep: OQ240257.1__WEU69604.1__X__00053__D1-57
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4krdA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.77 | 42.0 | 2.82e-01 | 98.4% | 16.3% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 36.0 | 3.01e-01 | 73.0% | 27.2% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.67 | 60.0 | 4.22e-01 | 100.0% | 78.0% |
| 4g7xB00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.64 | 58.0 | 4.91e-01 | 100.0% | 80.4% |
| 2m7aA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 43.0 | 3.91e-01 | 84.1% | 53.5% |
| 2nrjA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.61 | 54.0 | 3.44e-01 | 100.0% | 56.4% |
| 3aqoA01 | 3.30.70.3400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 52.0 | 4.78e-01 | 93.7% | 77.5% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 53.0 | 4.87e-01 | 96.8% | 100.0% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.60 | 54.0 | 3.70e-01 | 100.0% | 73.3% |
| 1sovA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.59 | 47.0 | 3.47e-01 | 88.9% | 43.6% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 51.0 | 4.48e-01 | 100.0% | 71.3% |
| 4ijrA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.56 | 48.0 | 3.09e-01 | 100.0% | 55.8% |
| 3cesA03 | 1.10.10.1800 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA | 0.56 | 49.0 | 4.34e-01 | 96.8% | 82.6% |
| 1zxeC02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.56 | 46.0 | 3.42e-01 | 95.2% | 40.3% |
| 1jnrA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 45.0 | 2.87e-01 | 95.2% | 61.8% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.56 | 45.0 | 4.50e-01 | 92.1% | 86.4% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 44.0 | 4.08e-01 | 87.3% | 70.4% |
| 4yy8B01 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.55 | 39.0 | 3.67e-01 | 82.5% | 61.5% |
| 3k4uE01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 43.0 | 3.45e-01 | 90.5% | 83.7% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.54 | 39.0 | 3.60e-01 | 88.9% | 57.1% |
| 5xuhA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.54 | 45.0 | 3.66e-01 | 95.2% | 57.6% |
| 4fx5A03 | 1.20.120.1690 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 45.0 | 3.95e-01 | 100.0% | 95.0% |
| 2v50D07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.53 | 45.0 | 3.96e-01 | 95.2% | 70.5% |
| 5ctnA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 42.0 | 2.90e-01 | 88.9% | 96.6% |
| 3pg1A02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 40.0 | 2.98e-01 | 92.1% | 69.8% |
| 1p65A00 | 6.10.140.90 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 36.0 | 3.78e-01 | 85.7% | 80.7% |
| 1n6zA00 | 3.10.20.250 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › YML108W-like | 0.52 | 40.0 | 3.52e-01 | 90.5% | 55.2% |
| 3ei3A04 | 1.10.150.910 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 36.0 | 3.32e-01 | 76.2% | 81.2% |
| 5t0oA03 | 3.30.70.1320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like | 0.51 | 43.0 | 3.75e-01 | 96.8% | 69.3% |
| 1afsA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.51 | 45.0 | 2.85e-01 | 100.0% | 24.5% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3611776 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.83 | 43.0 | 3.20e-01 | 74.6% | 23.6% |
| 3247392 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.81 | 46.0 | 3.43e-01 | 100.0% | 24.0% |
| 3309680 | 170.1.1.26 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7746 | 0.75 | 45.0 | 3.70e-01 | 98.4% | 34.5% |
| 4400946 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.71 | 58.0 | 4.35e-01 | 100.0% | 37.3% |
| 4012130 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.70 | 39.0 | 2.32e-01 | 98.4% | 7.2% |
| 4244236 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.68 | 60.0 | 5.01e-01 | 100.0% | 79.1% |
| 5055185 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.68 | 52.0 | 5.35e-01 | 95.2% | 91.7% |
| 3504887 | 3525.1.1.2 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › AHD | 0.67 | 49.0 | 5.04e-01 | 88.9% | 80.0% |
| 3296694 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.66 | 46.0 | 2.97e-01 | 73.0% | 49.5% |
| 3823306 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.66 | 50.0 | 4.05e-01 | 100.0% | 44.3% |
| 3574711 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.64 | 45.0 | 3.31e-01 | 82.5% | 27.6% |
| 3871961 | 5001.1.1.43 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › V1R | 0.62 | 56.0 | 3.49e-01 | 98.4% | 20.8% |
| 3877546 | 5001.1.1.9 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TAS2R | 0.60 | 55.0 | 3.46e-01 | 100.0% | 21.0% |
| 4030200 | 109.4.1.3075 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, Xpo1, CRM1_C, CRM1_repeat_2, CRM1_repeat_3 | 0.59 | 52.0 | 2.81e-01 | 100.0% | 5.3% |
| 3576628 | 109.21.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 | 0.59 | 50.0 | 2.92e-01 | 95.2% | 10.7% |
| 3063719 | 5040.1.1.3 ↗ | extended segments › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › FixP_N | 0.58 | 52.0 | 4.42e-01 | 100.0% | 65.7% |
| 3474961 | 3525.1.1.0 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain | 0.58 | 46.0 | 4.24e-01 | 85.7% | 68.8% |
| 3724382 | 3291.1.1.105 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Med14 | 0.57 | 50.0 | 3.78e-01 | 98.4% | 43.9% |
| 5075233 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.57 | 45.0 | 4.21e-01 | 85.7% | 69.3% |
| 4115648 | 3671.1.1.1 ↗ | alpha duplicates or obligate multimers › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Tir_receptor_M | 0.57 | 48.0 | 4.36e-01 | 98.4% | 69.4% |
| 5041640 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.57 | 43.0 | 3.43e-01 | 85.7% | 39.3% |
| 4990174 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.56 | 48.0 | 3.30e-01 | 96.8% | 27.0% |
| 3271984 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.56 | 49.0 | 3.74e-01 | 96.8% | 82.1% |
| 4972465 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.56 | 43.0 | 4.26e-01 | 84.1% | 78.5% |
| 5057313 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.56 | 44.0 | 2.71e-01 | 85.7% | 98.4% |
| 4061408 | 109.4.1.1731 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N | 0.56 | 40.0 | 2.40e-01 | 87.3% | 10.2% |
| 3504598 | 109.4.1.72 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C | 0.55 | 49.0 | 3.02e-01 | 100.0% | 20.5% |
| 3627163 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.54 | 46.0 | 3.73e-01 | 100.0% | 48.0% |
| 4965179 | 5040.1.1.0 ↗ | extended segments › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region | 0.53 | 47.0 | 4.45e-01 | 100.0% | 88.0% |
| 4220179 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 42.0 | 3.69e-01 | 100.0% | 55.2% |
| 4336918 | 3529.1.1.2 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_2 | 0.53 | 40.0 | 3.88e-01 | 79.4% | 92.9% |
| 5011531 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.53 | 39.0 | 3.73e-01 | 79.4% | 82.7% |
| 3190050 | 7579.1.1.9 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase | 0.52 | 38.0 | 2.46e-01 | 96.8% | 15.6% |
| 5031902 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.52 | 39.0 | 3.82e-01 | 82.5% | 75.7% |
| 3242948 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.52 | 41.0 | 2.86e-01 | 90.5% | 68.0% |
| 5056844 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.52 | 42.0 | 3.20e-01 | 88.9% | 41.4% |
| 5028902 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.51 | 39.0 | 3.69e-01 | 96.8% | 69.3% |
| 3888658 | 604.9.1.10 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › EPS8_2nd | 0.51 | 46.0 | 3.43e-01 | 98.4% | 100.0% |
| 4972750 | 304.12.1.17 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › GYD | 0.51 | 41.0 | 3.66e-01 | 92.1% | 61.1% |
| 5075549 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.51 | 39.0 | 3.78e-01 | 82.5% | 75.7% |
| 3487912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 3.40e-01 | 88.9% | 70.9% |