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MK448719.1__QBX16539.1__Javan255_0024__00022
Bact-VirMK448719.1__QBX16539.1__Javan255_0024__00022
Identity
- Accession:
- MK448719 ↗
- Kingdom:
- phage
Quality
83.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-43
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.61 | 47.0 | 3.84e-01 | 100.0% | 91.0% |
| 3ty2A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.58 | 45.0 | 2.87e-01 | 100.0% | 82.4% |
| 1vwxP00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.57 | 41.0 | 2.97e-01 | 92.1% | 70.6% |
| 1vq8U00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.57 | 39.0 | 3.51e-01 | 71.1% | 54.7% |
| 2qmiA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 41.0 | 2.44e-01 | 89.5% | 63.4% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 39.0 | 2.91e-01 | 89.5% | 57.1% |
| 6pzjA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 42.0 | 2.99e-01 | 100.0% | 38.5% |
| 3p9dE01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.52 | 39.0 | 2.50e-01 | 94.7% | 56.6% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 39.0 | 2.75e-01 | 100.0% | 37.0% |
| 4hstA01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.51 | 37.0 | 2.49e-01 | 94.7% | 19.9% |
| 6ks6Z01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.50 | 36.0 | 2.35e-01 | 94.7% | 56.1% |
| 1jsgA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.50 | 36.0 | 2.81e-01 | 84.2% | 86.5% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 37.0 | 2.74e-01 | 100.0% | 28.8% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589831 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.95 | 85.0 | 8.00e-01 | 100.0% | 82.2% |
| 4962305 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.86 | 73.0 | 6.75e-01 | 100.0% | 88.0% |
| 4939022 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.84 | 72.0 | 6.64e-01 | 100.0% | 88.0% |
| 4947865 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.84 | 70.0 | 6.51e-01 | 100.0% | 86.0% |
| 5057441 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.83 | 71.0 | 6.84e-01 | 100.0% | 95.6% |
| 4927110 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.83 | 69.0 | 6.61e-01 | 100.0% | 95.6% |
| 4947224 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.82 | 66.0 | 6.24e-01 | 100.0% | 88.0% |
| 5010299 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.81 | 67.0 | 6.29e-01 | 100.0% | 88.0% |
| 3165734 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.81 | 68.0 | 5.42e-01 | 100.0% | 47.4% |
| 4967714 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.80 | 69.0 | 5.95e-01 | 100.0% | 65.0% |
| 5031154 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 63.0 | 5.64e-01 | 100.0% | 70.0% |
| 5029523 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 65.0 | 6.13e-01 | 100.0% | 89.6% |
| 5050197 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.78 | 67.0 | 5.39e-01 | 100.0% | 52.0% |
| 3590560 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 64.0 | 5.39e-01 | 100.0% | 55.7% |
| 5073296 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.76 | 60.0 | 5.69e-01 | 100.0% | 90.0% |
| 5069260 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.75 | 59.0 | 5.61e-01 | 100.0% | 84.0% |
| 4944882 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.72 | 56.0 | 5.35e-01 | 100.0% | 86.0% |
| 5079091 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.71 | 56.0 | 5.15e-01 | 100.0% | 65.5% |
| 3280820 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.69 | 56.0 | 5.15e-01 | 100.0% | 70.9% |
| 4955284 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.68 | 53.0 | 5.16e-01 | 100.0% | 88.9% |
| 4944262 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.64 | 50.0 | 3.08e-01 | 100.0% | 13.3% |
| 4937554 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.62 | 46.0 | 4.63e-01 | 84.2% | 87.2% |
| 3615422 | 59.1.1.2 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 | 0.60 | 45.0 | 3.28e-01 | 89.5% | 31.9% |
| 3191150 | 59.1.1.5 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 | 0.54 | 39.0 | 3.17e-01 | 92.1% | 35.0% |
| 4021130 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.54 | 40.0 | 2.72e-01 | 100.0% | 23.5% |
| 3521130 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.52 | 34.0 | 3.59e-01 | 78.9% | 88.0% |
| 4832976 | 377.12.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 › Ribosomal_L34e | 0.50 | 35.0 | 2.71e-01 | 81.6% | 29.5% |
D2
medium
residues 54-92
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bl7A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.64 | 47.0 | 3.70e-01 | 74.4% | 35.4% |
| 2eqoA01 | 1.10.418.50 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Microtubule-binding protein MIP-T3 | 0.62 | 46.0 | 3.27e-01 | 89.7% | 25.2% |
| 2dy1A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 50.0 | 2.96e-01 | 82.1% | 13.5% |
| 1id1A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 46.0 | 3.14e-01 | 87.2% | 43.1% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.58 | 41.0 | 2.85e-01 | 76.9% | 72.9% |
| 2bl0C01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 45.0 | 3.58e-01 | 89.7% | 54.7% |
| 3qrxA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.50 | 38.0 | 3.27e-01 | 87.2% | 61.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3899274 | 109.4.1.108 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CTNNBL | 0.88 | 64.0 | 3.49e-01 | 76.9% | 5.5% |
| 1633635 | 320.4.1.3 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB | 0.81 | 58.0 | 4.12e-01 | 76.9% | 27.2% |
| 3185270 | 611.1.1.1 ↗ | alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer | 0.74 | 57.0 | 3.70e-01 | 84.6% | 87.9% |
| 3610787 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.69 | 55.0 | 3.12e-01 | 89.7% | 23.7% |