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MK448720.1__QBX16580.1__Javan261_0020__00020
Bact-VirMK448720.1__QBX16580.1__Javan261_0020__00020
Identity
- Accession:
- MK448720 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-58_84-101
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rayA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.52 | 24.0 | 2.88e-01 | 84.2% | 62.0% |
| 3broD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.47e-01 | 89.5% | 61.2% |
| 4uwmA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.51 | 37.0 | 2.42e-01 | 77.6% | 78.5% |
D2
medium
residues 59-83_173-223
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ichA02 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.73 | 45.0 | 3.77e-01 | 84.2% | 36.9% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.66 | 57.0 | 3.85e-01 | 93.4% | 37.6% |
| 1c16A01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.65 | 51.0 | 3.98e-01 | 85.5% | 81.6% |
| 1zs8A01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.62 | 48.0 | 3.75e-01 | 85.5% | 87.1% |
| 3bf2A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.60 | 46.0 | 3.90e-01 | 81.6% | 65.6% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 42.0 | 4.28e-01 | 90.8% | 76.7% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.59 | 44.0 | 4.14e-01 | 88.2% | 65.9% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 44.0 | 3.69e-01 | 97.4% | 45.3% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 42.0 | 3.41e-01 | 88.2% | 39.6% |
| 4o3vA00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.58 | 45.0 | 3.75e-01 | 85.5% | 73.9% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 49.0 | 3.85e-01 | 100.0% | 53.8% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 3.01e-01 | 94.7% | 32.9% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 47.0 | 4.21e-01 | 100.0% | 86.2% |
| 3bnvD00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 45.0 | 3.66e-01 | 92.1% | 72.0% |
| 3g8zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 37.0 | 3.11e-01 | 82.9% | 43.0% |
| 7f13A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 39.0 | 3.18e-01 | 80.3% | 41.0% |
| 1fuwA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 43.0 | 4.11e-01 | 93.4% | 97.8% |
| 2ownA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 46.0 | 3.18e-01 | 98.7% | 46.9% |
| 3qkgA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 45.0 | 3.58e-01 | 100.0% | 53.7% |
| 1vkcA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 40.0 | 3.31e-01 | 85.5% | 64.0% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 38.0 | 3.32e-01 | 81.6% | 90.2% |
| 1rxtC02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 42.0 | 3.16e-01 | 92.1% | 65.8% |
| 7x7zA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.51 | 41.0 | 3.50e-01 | 93.4% | 59.0% |
| 3dtdD00 | 2.60.40.1880 | Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein | 0.51 | 44.0 | 3.64e-01 | 100.0% | 57.9% |
| 5flwA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 41.0 | 2.87e-01 | 94.7% | 67.9% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976796 | 244.3.1.5 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › GutM | 0.70 | 45.0 | 4.15e-01 | 85.5% | 50.5% |
| 3681710 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.69 | 52.0 | 4.78e-01 | 88.2% | 63.2% |
| 4280513 | 222.2.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins | 0.66 | 51.0 | 4.49e-01 | 82.9% | 86.4% |
| 185765 | 5084.5.1.13 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF4595 | 0.66 | 57.0 | 3.85e-01 | 93.4% | 37.6% |
| 3797033 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.63 | 51.0 | 4.06e-01 | 94.7% | 43.2% |
| 3973908 | 881.1.1.25 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 | 0.63 | 50.0 | 3.94e-01 | 85.5% | 81.9% |
| 4029709 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.63 | 49.0 | 4.15e-01 | 90.8% | 51.2% |
| 4953226 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.63 | 40.0 | 4.24e-01 | 81.6% | 75.4% |
| 4977257 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.62 | 52.0 | 3.55e-01 | 90.8% | 27.2% |
| 5061403 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.62 | 45.0 | 4.00e-01 | 84.2% | 53.6% |
| 3173480 | 3755.4.1.28 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Kre28 | 0.60 | 47.0 | 4.49e-01 | 93.4% | 73.3% |
| 3588775 | 244.3.1.5 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › GutM | 0.59 | 40.0 | 3.62e-01 | 84.2% | 50.5% |
| 5045702 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.59 | 45.0 | 3.13e-01 | 88.2% | 24.8% |
| 4928052 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.59 | 50.0 | 3.25e-01 | 94.7% | 27.9% |
| 3689319 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.58 | 46.0 | 3.78e-01 | 85.5% | 48.6% |
| 4954883 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.58 | 46.0 | 3.17e-01 | 90.8% | 24.9% |
| 3593905 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.58 | 43.0 | 3.23e-01 | 85.5% | 31.3% |
| 3377418 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.57 | 47.0 | 3.68e-01 | 86.8% | 91.3% |
| 3512269 | 79.1.1.16 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 | 0.56 | 46.0 | 4.43e-01 | 92.1% | 81.1% |
| 3948068 | 4023.1.1.3 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 | 0.56 | 47.0 | 4.17e-01 | 93.4% | 84.5% |
| 5078784 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.55 | 44.0 | 3.10e-01 | 94.7% | 26.3% |
| 1758233 | 213.1.1.9 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NMT_C | 0.55 | 44.0 | 3.13e-01 | 89.5% | 61.0% |
| 3427891 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.55 | 48.0 | 3.13e-01 | 96.1% | 29.8% |
| 3441483 | 5.1.3.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 | 0.55 | 46.0 | 2.96e-01 | 92.1% | 32.0% |
| 4416182 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.54 | 43.0 | 3.91e-01 | 89.5% | 62.9% |
| 1346676 | 3347.1.1.1 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 | 0.54 | 47.0 | 4.21e-01 | 100.0% | 86.2% |
| 5039695 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 40.0 | 3.32e-01 | 80.3% | 67.9% |
| 4958989 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.54 | 42.0 | 3.34e-01 | 84.2% | 87.1% |
| 3393575 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.54 | 44.0 | 3.44e-01 | 92.1% | 51.4% |
| 3325566 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.53 | 45.0 | 3.05e-01 | 100.0% | 87.1% |
| 5038973 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 47.0 | 3.04e-01 | 100.0% | 39.1% |
| 3978060 | 4023.1.1.3 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 | 0.53 | 45.0 | 4.16e-01 | 94.7% | 80.0% |
| 3289451 | 243.1.1.63 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 | 0.53 | 41.0 | 3.43e-01 | 85.5% | 77.9% |
| 5060723 | 5.1.9.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain in ABC toxin B component › FG-GAP_3 | 0.53 | 44.0 | 2.90e-01 | 100.0% | 44.0% |
| 3959925 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 37.0 | 3.46e-01 | 86.8% | 57.0% |
| 2701923 | 243.3.1.6 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Monellin | 0.53 | 42.0 | 3.87e-01 | 86.8% | 82.8% |
| 4598563 | 5.1.7.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 | 0.52 | 44.0 | 2.71e-01 | 94.7% | 22.3% |
| 4960214 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.52 | 41.0 | 3.24e-01 | 85.5% | 84.4% |
| 2697035 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 41.0 | 3.25e-01 | 92.1% | 55.0% |
| 3925946 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 45.0 | 2.91e-01 | 100.0% | 29.9% |
| 5055280 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.51 | 41.0 | 3.41e-01 | 90.8% | 51.0% |
| 4159356 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.51 | 41.0 | 2.68e-01 | 92.1% | 26.1% |
| 3821765 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.51 | 43.0 | 2.87e-01 | 93.4% | 33.1% |
| 4029724 | 883.1.1.6 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N | 0.51 | 42.0 | 3.34e-01 | 88.2% | 60.4% |
| 3260465 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.51 | 43.0 | 2.85e-01 | 93.4% | 79.7% |
| 4672365 | 213.1.1.21 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C | 0.51 | 41.0 | 2.94e-01 | 89.5% | 68.7% |
| 4363703 | 213.1.1.9 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NMT_C | 0.50 | 39.0 | 2.90e-01 | 88.2% | 48.0% |
D3
medium
residues 102-172
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3owvB00 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.73 | 68.0 | 4.66e-01 | 100.0% | 39.7% |
| 1uaaA04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.51 | 43.0 | 3.36e-01 | 95.8% | 92.6% |
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.50 | 35.0 | 2.55e-01 | 73.2% | 33.5% |