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MK448722.1__QBX16663.1__Javan269_0022__00022
Bact-VirMK448722.1__QBX16663.1__Javan269_0022__00022
Identity
- Accession:
- MK448722 ↗
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 346-405
Domain cluster:
rep: MK448999.1__QBX31445.1__Javan638_0028__00028__D57-111
D2
medium
residues 34-116_175-190_317-342
Domain cluster:
rep: JQ312117.1__AFH19810.1__7-7-1_000113__00112__D28-125_313-371
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04860.18 best | Phage_portal | 96.2 | 3.00e-27 | 61.6% | 22.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943006 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.81 | 78.0 | 5.68e-01 | 100.0% | 82.4% |
| 4031453 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.74 | 65.0 | 4.95e-01 | 90.4% | 82.0% |
| 4410228 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.74 | 69.0 | 5.12e-01 | 96.8% | 82.9% |
| 4032886 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.72 | 65.0 | 4.88e-01 | 93.6% | 81.5% |
| 3589399 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.68 | 60.0 | 4.50e-01 | 92.8% | 82.9% |
| 3590909 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.67 | 63.0 | 4.76e-01 | 98.4% | 83.0% |
| 5082483 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.61 | 55.0 | 4.67e-01 | 96.0% | 95.4% |
D3
medium
residues 117-174
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cq2A02 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.69 | 42.0 | 4.83e-01 | 70.7% | 83.7% |
| 6eufA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.63 | 44.0 | 2.80e-01 | 100.0% | 14.0% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.63 | 43.0 | 2.75e-01 | 70.7% | 18.8% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 38.0 | 3.66e-01 | 100.0% | 52.2% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 42.0 | 3.83e-01 | 70.7% | 65.3% |
| 4dsdA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.62 | 47.0 | 3.67e-01 | 100.0% | 38.1% |
| 7x7zA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.61 | 46.0 | 3.49e-01 | 81.0% | 82.0% |
| 4g6tA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.60 | 41.0 | 3.21e-01 | 72.4% | 61.7% |
| 3aqoA02 | 3.30.1360.200 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.59 | 46.0 | 3.69e-01 | 94.8% | 82.3% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.59 | 47.0 | 4.34e-01 | 93.1% | 94.9% |
| 2laeA00 | 3.30.310.170 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC | 0.58 | 50.0 | 4.01e-01 | 98.3% | 74.6% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.58 | 39.0 | 3.30e-01 | 100.0% | 39.0% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.58 | 36.0 | 3.63e-01 | 72.4% | 63.2% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 41.0 | 3.46e-01 | 77.6% | 46.1% |
| 3kxyJ00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.57 | 40.0 | 3.10e-01 | 72.4% | 64.3% |
| 1v29B02 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 48.0 | 4.17e-01 | 100.0% | 77.3% |
| 1jv2B04 | 4.10.1240.30 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.56 | 41.0 | 3.62e-01 | 98.3% | 52.3% |
| 1auvB02 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 49.0 | 3.94e-01 | 100.0% | 59.5% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.55 | 43.0 | 2.70e-01 | 91.4% | 55.2% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.55 | 38.0 | 3.88e-01 | 72.4% | 85.5% |
| 2qn5B01 | 2.10.69.10 | Mainly Beta › Ribbon › Cysteine Protease (Bromelain) Inhibitor, subunit H › Cysteine Protease (Bromelain) Inhibitor, subunit H | 0.55 | 41.0 | 4.25e-01 | 100.0% | 92.6% |
| 8ciwA02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.54 | 39.0 | 3.15e-01 | 81.0% | 89.5% |
| 1od3A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 43.0 | 3.46e-01 | 94.8% | 93.1% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.54 | 46.0 | 3.51e-01 | 100.0% | 45.5% |
| 1p5tA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 44.0 | 3.78e-01 | 100.0% | 54.7% |
| 2bolB02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 44.0 | 3.45e-01 | 93.1% | 82.0% |
| 4lb0A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 38.0 | 2.82e-01 | 77.6% | 82.9% |
| 1x0tA02 | 6.20.50.20 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.53 | 37.0 | 3.98e-01 | 96.6% | 97.8% |
| 1g2bA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 44.0 | 4.37e-01 | 98.3% | 93.5% |
| 1vu2300 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 42.0 | 3.47e-01 | 100.0% | 55.9% |
| 3t0qA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.52 | 36.0 | 2.33e-01 | 75.9% | 95.4% |
| 2k49A00 | 2.30.29.80 | Mainly Beta › Roll › PH-domain like › | 0.51 | 43.0 | 3.51e-01 | 98.3% | 78.0% |
| 2x8fA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 45.0 | 2.81e-01 | 100.0% | 19.1% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.51 | 45.0 | 3.56e-01 | 100.0% | 78.0% |
| 3aabB00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 43.0 | 3.63e-01 | 100.0% | 79.2% |
| 3vsfC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 43.0 | 2.73e-01 | 100.0% | 17.3% |
| 2wbfX00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 41.0 | 2.79e-01 | 100.0% | 30.2% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942998 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.86 | 71.0 | 6.63e-01 | 100.0% | 72.9% |
| 4031151 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.85 | 73.0 | 6.63e-01 | 100.0% | 72.0% |
| 3419793 | 5.1.10.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 | 0.74 | 48.0 | 3.60e-01 | 75.9% | 28.9% |
| 1423607 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.69 | 42.0 | 4.78e-01 | 70.7% | 81.8% |
| 3385472 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 47.0 | 4.15e-01 | 79.3% | 92.2% |
| 4989812 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.63 | 42.0 | 4.23e-01 | 72.4% | 66.7% |
| 3444177 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 44.0 | 4.01e-01 | 77.6% | 75.0% |
| 4960051 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 50.0 | 3.62e-01 | 93.1% | 96.0% |
| 4012852 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.60 | 43.0 | 2.76e-01 | 75.9% | 22.3% |
| 4002681 | 377.1.2.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger | 0.59 | 42.0 | 3.62e-01 | 74.1% | 47.8% |
| 4002771 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 47.0 | 3.67e-01 | 96.6% | 40.0% |
| 3531933 | 3121.1.1.11 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › PF27961 | 0.58 | 38.0 | 3.37e-01 | 70.7% | 47.0% |
| 3718225 | 241.1.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT | 0.58 | 40.0 | 3.08e-01 | 74.1% | 62.1% |
| 3686820 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 40.0 | 2.39e-01 | 72.4% | 16.8% |
| 3595489 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 41.0 | 4.13e-01 | 100.0% | 75.0% |
| None | — | 0.57 | 39.0 | 2.58e-01 | 98.3% | 14.8% | |
| 3548462 | 2003.1.10.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Synapsin | 0.57 | 50.0 | 4.00e-01 | 100.0% | 58.3% |
| 3226947 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.57 | 48.0 | 3.99e-01 | 94.8% | 68.6% |
| 5073740 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.57 | 46.0 | 3.25e-01 | 93.1% | 68.6% |
| 4419521 | 243.1.1.108 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_YvbJ | 0.57 | 47.0 | 3.73e-01 | 98.3% | 86.7% |
| 3607981 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 44.0 | 4.17e-01 | 100.0% | 70.3% |
| 3217097 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.56 | 45.0 | 3.60e-01 | 96.6% | 43.0% |
| None | — | 0.56 | 39.0 | 2.20e-01 | 100.0% | 5.8% | |
| 3940807 | 101.1.2.194 ↗ | alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH | 0.56 | 43.0 | 3.25e-01 | 82.8% | 40.7% |
| 3439646 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.56 | 38.0 | 3.20e-01 | 72.4% | 45.7% |
| 3491784 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.56 | 47.0 | 3.78e-01 | 100.0% | 65.6% |
| 3995290 | 4.1.1.332 ↗ | beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 | 0.56 | 47.0 | 3.94e-01 | 100.0% | 69.1% |
| 3257563 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.55 | 37.0 | 3.20e-01 | 70.7% | 75.8% |
| 3722154 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.55 | 49.0 | 3.51e-01 | 98.3% | 88.5% |
| 3500426 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.55 | 41.0 | 2.48e-01 | 77.6% | 98.6% |
| 3690375 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.55 | 43.0 | 3.53e-01 | 100.0% | 76.4% |
| 3177736 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 41.0 | 2.43e-01 | 94.8% | 9.7% |
| 3830375 | 319.1.1.15 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 | 0.55 | 44.0 | 3.94e-01 | 94.8% | 95.6% |
| 5032255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 48.0 | 4.53e-01 | 100.0% | 81.4% |
| 3681793 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.54 | 45.0 | 4.48e-01 | 96.6% | 96.7% |
| 3719460 | 101.1.12.0 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures | 0.54 | 46.0 | 3.56e-01 | 96.6% | 72.3% |
| 3639482 | 220.1.1.211 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 | 0.53 | 47.0 | 3.59e-01 | 100.0% | 86.4% |
| 3570950 | 63.1.1.3 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH | 0.53 | 42.0 | 3.02e-01 | 91.4% | 48.9% |
| 3544420 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 41.0 | 3.87e-01 | 98.3% | 68.5% |
| 3072568 | 4052.1.1.1 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA_dh_M | 0.52 | 41.0 | 3.36e-01 | 94.8% | 98.4% |
| 4027119 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.52 | 36.0 | 2.91e-01 | 79.3% | 33.3% |
| 3503502 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.52 | 35.0 | 2.78e-01 | 96.6% | 32.3% |
| 3173222 | 4075.1.1.0 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain | 0.52 | 38.0 | 3.08e-01 | 79.3% | 74.8% |
| 4021107 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 41.0 | 2.76e-01 | 96.6% | 22.1% |
| 3402045 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.51 | 43.0 | 3.64e-01 | 100.0% | 69.5% |
| 3248540 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.50 | 43.0 | 3.56e-01 | 100.0% | 71.8% |
| 3318895 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.50 | 42.0 | 3.63e-01 | 96.6% | 70.5% |
D4
medium
residues 191-213_264-316
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04860.18 best | Phage_portal | 72.0 | 7.20e-20 | 71.0% | 16.2% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.72 | 53.0 | 4.90e-01 | 77.6% | 74.2% |
| 6yz2A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.69 | 49.0 | 4.17e-01 | 73.7% | 64.2% |
| 6a3kA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.66 | 43.0 | 3.64e-01 | 94.7% | 39.5% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.66 | 44.0 | 4.53e-01 | 100.0% | 71.6% |
| 3rbtA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 45.0 | 3.92e-01 | 72.4% | 76.9% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 44.0 | 4.58e-01 | 71.1% | 97.2% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 46.0 | 4.08e-01 | 75.0% | 78.2% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.64 | 45.0 | 3.96e-01 | 98.7% | 50.0% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 47.0 | 4.24e-01 | 100.0% | 57.7% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.63 | 49.0 | 4.42e-01 | 84.2% | 94.4% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.63 | 45.0 | 3.92e-01 | 75.0% | 58.0% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 43.0 | 3.96e-01 | 100.0% | 54.5% |
| 2yayA02 | 1.20.1670.10 | Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase | 0.62 | 45.0 | 3.68e-01 | 75.0% | 94.1% |
| 2w3sB02 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.62 | 44.0 | 3.40e-01 | 73.7% | 75.8% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 53.0 | 4.72e-01 | 98.7% | 82.5% |
| 2xvtC00 | 1.10.150.510 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family | 0.61 | 43.0 | 4.26e-01 | 72.4% | 75.9% |
| 2h7oA01 | 1.20.120.1330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain | 0.61 | 51.0 | 4.39e-01 | 93.4% | 80.5% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 43.0 | 4.21e-01 | 75.0% | 70.6% |
| 3vfcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 44.0 | 3.54e-01 | 77.6% | 87.9% |
| 2fupA00 | 1.20.58.300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like | 0.60 | 41.0 | 3.56e-01 | 72.4% | 57.5% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 41.0 | 3.30e-01 | 75.0% | 71.3% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 41.0 | 3.85e-01 | 73.7% | 83.9% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.55 | 47.0 | 4.58e-01 | 96.1% | 90.7% |
| 2yv9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 45.0 | 3.79e-01 | 97.4% | 93.3% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.50 | 40.0 | 3.46e-01 | 90.8% | 89.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4533341 | 159.1.1.4 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › PRA-PH | 0.73 | 51.0 | 4.48e-01 | 72.4% | 50.0% |
| 4973477 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.73 | 51.0 | 4.81e-01 | 72.4% | 61.1% |
| 3698361 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.71 | 52.0 | 4.79e-01 | 76.3% | 88.4% |
| 4198998 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.71 | 45.0 | 5.40e-01 | 97.4% | 100.0% |
| 3574040 | 192.8.1.34 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Meckelin | 0.70 | 48.0 | 4.34e-01 | 100.0% | 53.0% |
| 3884022 | 603.1.1.165 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TMEM151 | 0.70 | 48.0 | 4.42e-01 | 71.1% | 73.7% |
| 4680241 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.69 | 49.0 | 5.24e-01 | 100.0% | 86.2% |
| 4975169 | 3997.1.1.0 ↗ | alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit | 0.67 | 46.0 | 3.41e-01 | 76.3% | 28.4% |
| 3679487 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 59.0 | 4.07e-01 | 98.7% | 47.2% |
| 3556539 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.65 | 44.0 | 3.63e-01 | 71.1% | 49.3% |
| 4358621 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.64 | 45.0 | 4.46e-01 | 73.7% | 70.9% |
| 3407107 | 109.4.1.496 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 | 0.62 | 42.0 | 3.80e-01 | 71.1% | 51.4% |
| 3630945 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.61 | 43.0 | 2.78e-01 | 73.7% | 37.6% |
| 3281911 | 601.4.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › NIT | 0.59 | 41.0 | 3.62e-01 | 73.7% | 60.0% |
| 3926326 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.53 | 46.0 | 3.88e-01 | 100.0% | 68.9% |
| 4316366 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.52 | 41.0 | 3.15e-01 | 89.5% | 94.0% |
D5
medium
residues 214-263
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04860.18 best | Phage_portal | 48.4 | 1.10e-12 | 100.0% | 16.2% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA03 | 3.30.1120.70 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.72 | 58.0 | 5.87e-01 | 92.0% | 98.0% |
| 1g6sA02 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.55 | 36.0 | 2.43e-01 | 74.0% | 16.7% |
| 2jmlA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.53 | 37.0 | 3.33e-01 | 78.0% | 74.1% |
| 2fnuB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 40.0 | 3.15e-01 | 90.0% | 92.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032886 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.90 | 83.0 | 5.07e-01 | 100.0% | 20.4% |
| 4410228 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.78 | 64.0 | 3.98e-01 | 94.0% | 19.3% |
| 3943006 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.72 | 63.0 | 3.89e-01 | 100.0% | 18.3% |
| 5039294 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.64 | 52.0 | 3.36e-01 | 100.0% | 17.9% |
| 4541623 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.61 | 42.0 | 2.73e-01 | 72.0% | 20.4% |
| 5033197 | 306.6.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like | 0.57 | 40.0 | 3.74e-01 | 76.0% | 93.8% |
| 4970748 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.53 | 42.0 | 3.60e-01 | 98.0% | 78.9% |
| 3699998 | 4340.1.1.0 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related | 0.50 | 36.0 | 3.47e-01 | 78.0% | 88.3% |
| 3276793 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 42.0 | 3.06e-01 | 100.0% | 64.5% |
| 3226069 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.50 | 28.0 | 2.87e-01 | 74.0% | 46.0% |
D6
medium
residues 430-603_617-623
Domain cluster:
rep: NC_021798.1__YP_008241581.1__Phi17-2_gp086__00086__D4-158
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00574.29 best | CLP_protease | 131.6 | 4.10e-38 | 93.9% | 89.6% |