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MK448727.1__QBX16923.1__Javan291_0047__00047

Bact-Vir

MK448727.1__QBX16923.1__Javan291_0047__00047

Identity

Accession:
MK448727 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan291

TaxID: 2548097

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-42
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10665.15 best Minor_capsid_1 29.0 1.70e-06 100.0% 33.3%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 5.14e-01 97.4% 56.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 5.15e-01 100.0% 57.1%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 4.90e-01 97.4% 53.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 5.12e-01 100.0% 57.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 4.97e-01 97.4% 52.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 4.57e-01 97.4% 49.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 54.0 4.38e-01 97.4% 46.7%
3s8sA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 52.0 3.86e-01 100.0% 32.7%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.66 49.0 2.90e-01 97.4% 10.0%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 55.0 3.76e-01 100.0% 31.0%
2dnmA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 52.0 3.92e-01 100.0% 35.0%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 46.0 2.73e-01 94.7% 9.6%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 48.0 3.55e-01 100.0% 29.9%
8ew8A01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.64 50.0 3.22e-01 100.0% 21.1%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.63 49.0 4.04e-01 100.0% 50.0%
5t9pA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 44.0 3.57e-01 100.0% 36.0%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.62 46.0 3.57e-01 100.0% 33.7%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.62 47.0 3.87e-01 100.0% 47.3%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 54.0 4.19e-01 100.0% 46.8%
2j8aA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 47.0 3.78e-01 100.0% 41.4%
4pkdB02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 47.0 3.49e-01 100.0% 31.9%
1h2vZ00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 46.0 3.68e-01 100.0% 38.7%
4iufA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 42.0 3.62e-01 100.0% 41.6%
4wkrA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 46.0 3.93e-01 100.0% 50.0%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 41.0 3.19e-01 100.0% 29.7%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 40.0 2.43e-01 71.1% 10.2%
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.59 47.0 3.83e-01 97.4% 51.9%
5zwnQ01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 44.0 3.69e-01 100.0% 45.0%
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.57 42.0 3.52e-01 100.0% 42.6%
6dddH00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.56 42.0 3.46e-01 100.0% 45.2%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.21e-01 100.0% 44.3%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 39.0 2.54e-01 94.7% 13.5%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 41.0 3.68e-01 100.0% 54.3%
2ku7A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 39.0 2.87e-01 100.0% 25.0%
4gc1A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.52 41.0 3.21e-01 100.0% 68.3%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.52 37.0 3.02e-01 94.7% 34.6%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 2.73e-01 94.7% 27.8%
4labA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.51 37.0 2.58e-01 97.4% 19.3%
1zyoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 41.0 3.34e-01 100.0% 51.8%
1x9pA01 2.60.120.550 Mainly Beta › Sandwich › Jelly Rolls › Penton protein; domain 1 0.51 36.0 2.47e-01 78.9% 58.9%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.79 65.0 5.41e-01 97.4% 53.8%
3802388 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.79 67.0 5.22e-01 97.4% 47.0%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 5.31e-01 100.0% 55.4%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 60.0 5.09e-01 97.4% 53.8%
5079843 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 61.0 5.28e-01 100.0% 67.7%
5038876 1.1.13.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.74 64.0 4.82e-01 97.4% 45.6%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.72 58.0 4.88e-01 97.4% 51.4%
3497989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.34e-01 100.0% 76.7%
3474784 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.70 61.0 3.93e-01 100.0% 26.3%
3688428 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.69 45.0 2.73e-01 92.1% 9.6%
3575776 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 58.0 5.35e-01 100.0% 84.0%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.68 54.0 4.41e-01 97.4% 45.0%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.42e-01 97.4% 50.0%
4020093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 3.81e-01 100.0% 34.1%
3510186 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.64 50.0 3.93e-01 100.0% 38.9%
4231034 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.64 49.0 3.88e-01 100.0% 43.0%
3690425 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.63 43.0 2.53e-01 94.7% 8.4%
4065090 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.63 51.0 3.97e-01 100.0% 43.2%
4851967 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 48.0 4.30e-01 97.4% 58.1%
4197939 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 47.0 3.81e-01 100.0% 44.2%
4850689 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.61 44.0 3.74e-01 89.5% 46.0%
4139867 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.59 45.0 3.62e-01 100.0% 44.2%
4120365 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.59 45.0 3.58e-01 100.0% 40.0%
3598219 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 3.11e-01 100.0% 26.4%
4168875 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.58 45.0 3.62e-01 100.0% 44.2%
1562394 1.1.8.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GlxA 0.57 46.0 3.45e-01 100.0% 46.3%
3384938 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.55 39.0 2.54e-01 71.1% 14.6%
3702172 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.55 41.0 3.69e-01 100.0% 55.4%
3499000 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 40.0 2.55e-01 100.0% 29.5%
3389720 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.54 39.0 2.30e-01 86.8% 17.9%
4863475 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 38.0 2.66e-01 78.9% 56.3%
3703332 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.53 46.0 2.87e-01 97.4% 91.1%
4092786 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.52 38.0 2.37e-01 89.5% 76.7%
3232331 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.50 35.0 2.39e-01 100.0% 38.8%
4958890 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.50 40.0 3.34e-01 100.0% 50.0%