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MK448735.1__QBX17316.1__Javan349_0041__00009
Bact-VirMK448735.1__QBX17316.1__Javan349_0041__00009
Identity
- Accession:
- MK448735 ↗
- Kingdom:
- phage
Quality
88.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 133-212
Domain cluster:
rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 32.4 | 1.30e-07 | 98.8% | 87.2% |
D2
medium
residues 2-121
Domain cluster:
rep: IMGVR_UViG_3300021490_000036-3300021490-Ga0190330_100054225__D11-128
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.67 | 37.0 | 4.60e-01 | 76.7% | 85.5% |
| 3up6A01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 35.0 | 3.16e-01 | 81.7% | 40.4% |
| 3p1vA01 | 2.60.40.3250 | Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain | 0.51 | 39.0 | 3.74e-01 | 79.2% | 91.3% |
| 5yb7A02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.51 | 36.0 | 3.47e-01 | 74.2% | 83.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3306922 | 11.1.1.60 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 | 0.59 | 42.0 | 3.73e-01 | 80.8% | 51.2% |
| 4443054 | 3115.1.1.9 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ | 0.59 | 39.0 | 3.98e-01 | 81.7% | 67.5% |
| 3508713 | 382.1.1.25 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ | 0.58 | 39.0 | 3.92e-01 | 81.7% | 66.7% |
| 3243866 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.56 | 34.0 | 3.68e-01 | 80.8% | 72.0% |
| 3611709 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.64e-01 | 80.8% | 68.7% |