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MK448737.1__QBX17420.1__Javan351_0036__00036
Bact-VirMK448737.1__QBX17420.1__Javan351_0036__00036
Identity
- Accession:
- MK448737 ↗
- Kingdom:
- phage
Quality
68.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 90-162
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.76 | 57.0 | 3.93e-01 | 83.6% | 24.3% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 42.0 | 4.09e-01 | 93.2% | 54.3% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.70 | 48.0 | 5.19e-01 | 71.2% | 100.0% |
| 4ezcB00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.70 | 59.0 | 3.85e-01 | 95.9% | 85.8% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.69 | 57.0 | 4.70e-01 | 90.4% | 52.3% |
| 4yosA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.67 | 55.0 | 4.36e-01 | 93.2% | 45.6% |
| 1yz6A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.67 | 55.0 | 5.23e-01 | 90.4% | 82.8% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 49.0 | 4.72e-01 | 80.8% | 84.7% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 50.0 | 4.54e-01 | 83.6% | 65.0% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 55.0 | 4.46e-01 | 93.2% | 51.7% |
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 45.0 | 4.35e-01 | 71.2% | 77.8% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.65 | 51.0 | 4.95e-01 | 89.0% | 81.4% |
| 2oexA02 | 1.20.140.50 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains | 0.65 | 49.0 | 3.56e-01 | 80.8% | 83.2% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.65 | 46.0 | 3.25e-01 | 74.0% | 38.8% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 49.0 | 4.44e-01 | 84.9% | 73.8% |
| 2qnlA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.63 | 51.0 | 3.93e-01 | 87.7% | 98.8% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 47.0 | 4.41e-01 | 79.5% | 75.6% |
| 1svvB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 47.0 | 4.40e-01 | 80.8% | 97.8% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 52.0 | 4.11e-01 | 93.2% | 59.4% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 46.0 | 4.24e-01 | 79.5% | 63.9% |
| 4hstB03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.62 | 44.0 | 3.63e-01 | 74.0% | 56.6% |
| 2ahoB02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.62 | 51.0 | 4.74e-01 | 90.4% | 81.3% |
| 2lyiA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.61 | 44.0 | 3.64e-01 | 79.5% | 81.8% |
| 2z3tA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 51.0 | 3.29e-01 | 95.9% | 28.1% |
| 1vq8P03 | 1.10.1200.60 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.61 | 44.0 | 4.93e-01 | 79.5% | 100.0% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 40.0 | 4.31e-01 | 75.3% | 84.7% |
| 2ivxB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 44.0 | 3.87e-01 | 79.5% | 53.9% |
| 1i24A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.60 | 48.0 | 3.79e-01 | 84.9% | 59.2% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 52.0 | 4.68e-01 | 95.9% | 88.0% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 48.0 | 4.17e-01 | 87.7% | 59.8% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 44.0 | 4.27e-01 | 79.5% | 76.2% |
| 2w96A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 45.0 | 3.97e-01 | 84.9% | 56.6% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 43.0 | 4.19e-01 | 78.1% | 80.5% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.59 | 44.0 | 4.28e-01 | 83.6% | 77.4% |
| 3nv6A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 49.0 | 3.12e-01 | 97.3% | 26.5% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.58 | 44.0 | 3.97e-01 | 83.6% | 64.4% |
| 1txuA02 | 1.20.1050.80 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain | 0.56 | 45.0 | 3.47e-01 | 86.3% | 58.7% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.55 | 46.0 | 3.48e-01 | 94.5% | 93.1% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.54 | 33.0 | 3.44e-01 | 82.2% | 63.8% |
| 4byfC01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.52 | 37.0 | 3.45e-01 | 74.0% | 66.3% |
| 1szhA02 | 1.10.150.370 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain | 0.52 | 36.0 | 3.56e-01 | 75.3% | 100.0% |
| 2hpiA03 | 1.10.10.1600 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain | 0.51 | 37.0 | 3.74e-01 | 80.8% | 77.5% |
| 5t3wA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 36.0 | 2.93e-01 | 72.6% | 66.4% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.51 | 34.0 | 3.47e-01 | 71.2% | 85.3% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5031862 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.79 | 60.0 | 4.48e-01 | 83.6% | 34.1% |
| 4442514 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.79 | 52.0 | 6.01e-01 | 74.0% | 100.0% |
| 4148430 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.75 | 49.0 | 5.70e-01 | 74.0% | 100.0% |
| 4046570 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.74 | 54.0 | 5.84e-01 | 76.7% | 93.3% |
| 3928496 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.72 | 55.0 | 5.95e-01 | 84.9% | 100.0% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.71 | 51.0 | 4.52e-01 | 75.3% | 60.0% |
| 4453525 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.70 | 52.0 | 5.45e-01 | 79.5% | 92.3% |
| 4076702 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.70 | 54.0 | 4.84e-01 | 82.2% | 71.0% |
| 4976690 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 46.0 | 5.35e-01 | 72.6% | 100.0% |
| 4585171 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.69 | 49.0 | 5.42e-01 | 76.7% | 100.0% |
| 4024271 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.68 | 56.0 | 4.55e-01 | 89.0% | 81.5% |
| 3712322 | 3050.1.1.0 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain | 0.67 | 53.0 | 4.18e-01 | 91.8% | 42.0% |
| 4951434 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.66 | 57.0 | 4.01e-01 | 98.6% | 43.8% |
| 3705785 | 3050.1.1.30 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › TMEM254 | 0.66 | 52.0 | 4.80e-01 | 91.8% | 66.3% |
| 60261 | 166.1.1.0 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C | 0.66 | 49.0 | 4.58e-01 | 82.2% | 74.7% |
| 5082367 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.65 | 48.0 | 5.06e-01 | 78.1% | 96.9% |
| 4933362 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.64 | 48.0 | 3.97e-01 | 78.1% | 87.2% |
| 4992927 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.64 | 47.0 | 4.81e-01 | 78.1% | 90.0% |
| 5048820 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.64 | 44.0 | 3.03e-01 | 71.2% | 24.7% |
| 3793451 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.63 | 47.0 | 3.57e-01 | 79.5% | 65.1% |
| 3275441 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.63 | 51.0 | 3.28e-01 | 87.7% | 20.0% |
| 3568387 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.63 | 50.0 | 4.00e-01 | 87.7% | 53.3% |
| 3648217 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.63 | 49.0 | 4.48e-01 | 86.3% | 75.0% |
| 4931700 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.62 | 46.0 | 4.67e-01 | 78.1% | 90.0% |
| 3535287 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.61 | 45.0 | 4.46e-01 | 78.1% | 78.7% |
| 4990528 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 43.0 | 4.11e-01 | 74.0% | 65.9% |
| 3932619 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.61 | 49.0 | 4.01e-01 | 89.0% | 55.1% |
| 3324366 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.60 | 45.0 | 4.22e-01 | 83.6% | 66.7% |
| 3923539 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.59 | 47.0 | 3.86e-01 | 89.0% | 50.3% |
| 3674695 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.59 | 42.0 | 3.89e-01 | 76.7% | 61.2% |
| 5035414 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.58 | 45.0 | 4.23e-01 | 83.6% | 72.2% |
| 4980213 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 34.0 | 3.26e-01 | 84.9% | 50.6% |
| 5081674 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.58 | 42.0 | 4.17e-01 | 79.5% | 75.0% |
| 3318623 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.58 | 43.0 | 4.64e-01 | 79.5% | 100.0% |
| 3308724 | 3721.1.1.2 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › MAP65_ASE1 | 0.58 | 52.0 | 4.81e-01 | 97.3% | 87.8% |
| 4669986 | 4198.1.1.0 ↗ | alpha arrays › TerB-like › TerB-like › TerB-like | 0.57 | 48.0 | 3.85e-01 | 93.2% | 71.0% |
| 3663611 | 5050.1.1.57 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like, NFD4_C | 0.56 | 48.0 | 3.35e-01 | 98.6% | 82.7% |
| 5058380 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.55 | 42.0 | 3.88e-01 | 84.9% | 66.0% |
| 4206040 | 4044.1.1.1 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane | 0.54 | 45.0 | 3.55e-01 | 93.2% | 55.5% |
| 5001990 | 4044.1.1.1 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane | 0.53 | 44.0 | 3.71e-01 | 93.2% | 68.8% |
| 3437512 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.52 | 43.0 | 2.95e-01 | 94.5% | 42.0% |
| 4963932 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 29.0 | 2.84e-01 | 86.3% | 49.4% |