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MK448737.1__QBX17429.1__Javan351_0045__00045

Bact-Vir

MK448737.1__QBX17429.1__Javan351_0045__00045

Identity

Accession:
MK448737 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan351

TaxID: 2548122

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-92
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 32.0 3.44e-01 100.0% 54.4%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.63 35.0 4.19e-01 82.7% 83.3%
3mwyW04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 51.0 3.49e-01 93.3% 87.7%
2m3aA00 1.10.10.1900 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like 0.60 43.0 4.51e-01 100.0% 88.1%
3m8jA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 37.0 3.52e-01 100.0% 56.7%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.56 42.0 3.61e-01 84.0% 86.5%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.54 43.0 4.11e-01 96.0% 76.4%
1s7eA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 35.0 3.56e-01 97.3% 68.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5031295 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.67 52.0 4.22e-01 84.0% 78.6%
3351472 101.1.1.292 ↗ alpha arrays › HTH › HTH › Three-helical HTH › RVE6 0.62 34.0 3.63e-01 98.7% 61.5%
3516813 2004.1.1.24 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.59 47.0 2.86e-01 88.0% 45.6%
5003693 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 39.0 4.15e-01 100.0% 81.5%
5008720 101.1.1.548 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.57 39.0 4.09e-01 100.0% 83.1%
3476956 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.56 43.0 4.42e-01 86.7% 95.7%
3693602 3541.1.1.2 ↗ beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG29_N 0.55 42.0 4.05e-01 100.0% 74.1%
3297949 592.7.1.2 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › PWI 0.54 35.0 3.73e-01 94.7% 75.4%
3300095 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.54 35.0 3.72e-01 94.7% 75.4%
3989298 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.53 44.0 3.54e-01 97.3% 87.9%
3436955 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 34.0 3.53e-01 82.7% 71.4%
3725825 7000.1.1.2 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › RBD_LARS1 0.52 36.0 3.69e-01 98.7% 77.1%
3382545 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.51 37.0 2.58e-01 77.3% 35.1%