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MK448738.1__QBX17485.1__Javan355_0047__00007

Bact-Vir

MK448738.1__QBX17485.1__Javan355_0047__00007

Identity

Accession:
MK448738 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan355

TaxID: 2548123

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-106
PDB
Domain cluster: rep: MW584206.1__QSM04889.1__PROPHIGD91-4_38__00038__D34-174
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.80 46.0 6.07e-01 84.6% 100.0%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 50.0 6.01e-01 97.1% 98.6%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 47.0 5.62e-01 97.1% 91.5%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 48.0 5.60e-01 98.1% 91.9%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 49.0 5.78e-01 97.1% 95.9%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.78e-01 98.1% 94.7%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 50.0 5.17e-01 99.0% 74.0%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 5.66e-01 97.1% 96.2%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.62e-01 97.1% 97.5%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 44.0 4.09e-01 98.1% 54.6%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.61 37.0 3.77e-01 100.0% 61.4%
1rkqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.58 39.0 3.90e-01 100.0% 66.4%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.52 42.0 3.80e-01 91.3% 85.5%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.30e-01 86.5% 88.9%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.50 43.0 4.34e-01 93.3% 99.1%
3daoA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.50 43.0 4.26e-01 94.2% 99.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1175040 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.81 46.0 6.09e-01 86.5% 100.0%
3621457 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.77 49.0 5.86e-01 94.2% 95.7%
3595291 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 51.0 5.46e-01 97.1% 78.9%
3712963 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.76 51.0 5.36e-01 97.1% 75.5%
3518029 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.74 50.0 5.12e-01 97.1% 71.0%
2632533 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.73 48.0 5.72e-01 94.2% 100.0%
3704663 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.72 50.0 5.74e-01 94.2% 97.3%
3592467 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 50.0 5.78e-01 97.1% 98.7%
4938115 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.72 49.0 5.72e-01 97.1% 98.6%
3505097 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.71 50.0 5.47e-01 97.1% 88.2%
3271407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.45e-01 100.0% 88.2%
3712122 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.71 50.0 5.48e-01 100.0% 88.2%
4990442 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.71 47.0 5.34e-01 97.1% 88.7%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 45.0 4.78e-01 97.1% 73.3%
3788605 2006.1.1.27 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › ISN1 0.70 27.0 2.76e-01 100.0% 36.2%
409204 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.70 50.0 5.05e-01 98.1% 74.8%
3701868 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.70 50.0 5.42e-01 97.1% 86.7%
5055505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.61e-01 100.0% 95.3%
3988613 3012.1.1.4 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.61 41.0 4.04e-01 100.0% 65.5%
4015057 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.93e-01 97.1% 96.0%
3396740 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.51e-01 98.1% 97.9%