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MK448740.1__QBX17560.1__Javan367_0025__00025

Bact-Vir

MK448740.1__QBX17560.1__Javan367_0025__00025

Identity

Accession:
MK448740 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09643.16 best YopX 41.4 2.00e-10 100.0% 52.3%
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.71 65.0 6.22e-01 100.0% 89.6%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 5.52e-01 80.9% 100.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.46e-01 91.2% 80.8%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.69 54.0 4.80e-01 91.2% 58.4%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.68 62.0 6.25e-01 100.0% 97.1%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 4.65e-01 89.7% 58.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.28e-01 82.4% 100.0%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 45.0 3.24e-01 72.1% 61.0%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 45.0 3.23e-01 73.5% 64.7%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 45.0 3.65e-01 72.1% 79.4%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.77e-01 79.4% 91.1%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 43.0 3.57e-01 72.1% 82.3%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 43.0 3.59e-01 70.6% 81.5%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.63 52.0 4.59e-01 92.6% 98.0%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 44.0 3.34e-01 75.0% 61.3%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 50.0 4.73e-01 88.2% 100.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 49.0 4.74e-01 88.2% 100.0%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 41.0 4.02e-01 80.9% 63.5%
4qv2A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.61 51.0 4.33e-01 95.6% 94.1%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 5.03e-01 92.6% 95.8%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 44.0 3.64e-01 97.1% 44.9%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.90e-01 80.9% 85.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.32e-01 76.5% 100.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.59 46.0 4.25e-01 92.6% 67.0%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 3.34e-01 73.5% 56.0%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.49e-01 98.5% 98.2%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 42.0 3.74e-01 77.9% 100.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 3.96e-01 73.5% 85.3%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.56 47.0 4.25e-01 92.6% 77.7%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.76e-01 89.7% 75.8%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.56 45.0 4.00e-01 91.2% 97.2%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.46e-01 80.9% 69.8%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.55 41.0 4.25e-01 79.4% 89.2%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.55 46.0 3.59e-01 95.6% 70.9%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.68e-01 91.2% 92.1%
3nutB02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.55 45.0 3.67e-01 91.2% 75.8%
2zl7A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.54 44.0 4.06e-01 97.1% 69.2%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 43.0 3.60e-01 89.7% 71.8%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 45.0 3.96e-01 97.1% 81.9%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.44e-01 88.2% 47.4%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.85e-01 98.5% 61.8%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.28e-01 88.2% 43.0%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.83e-01 98.5% 67.0%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 44.0 3.97e-01 97.1% 76.0%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.34e-01 86.8% 50.0%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 44.0 3.94e-01 98.5% 79.0%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 45.0 3.78e-01 98.5% 75.6%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.67e-01 94.1% 58.4%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.52 42.0 3.07e-01 89.7% 82.4%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 42.0 3.71e-01 92.6% 96.2%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.26e-01 88.2% 66.4%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 45.0 3.58e-01 100.0% 66.9%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.28e-01 89.7% 94.4%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.39e-01 88.2% 51.6%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 44.0 3.53e-01 97.1% 61.9%
3kysA00 2.70.50.80 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › 0.51 44.0 3.16e-01 98.5% 84.1%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 3.22e-01 88.2% 94.1%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 35.0 3.00e-01 73.5% 62.1%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.73 60.0 5.69e-01 91.2% 90.0%
5034832 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.66e-01 85.3% 100.0%
5031715 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 53.0 4.29e-01 80.9% 65.2%
3508441 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 59.0 5.24e-01 91.2% 65.3%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.70 62.0 5.93e-01 98.5% 88.7%
5029031 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.74e-01 94.1% 98.3%
3356591 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.93e-01 91.2% 77.9%
3256498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.31e-01 95.6% 98.2%
4958989 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.66 45.0 3.42e-01 70.6% 79.4%
3609031 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.79e-01 92.6% 65.0%
3828348 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.57e-01 91.2% 100.0%
3877938 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 52.0 4.77e-01 91.2% 66.7%
58 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.65 45.0 3.65e-01 72.1% 79.4%
3696482 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.01e-01 97.1% 71.9%
3395948 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.64 47.0 5.12e-01 83.8% 98.2%
3812274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.04e-01 85.3% 60.0%
3520654 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.64 53.0 4.13e-01 92.6% 70.7%
4864011 1.1.7.41 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.63 53.0 4.62e-01 94.1% 91.4%
3592541 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.79e-01 94.1% 75.0%
3628131 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 52.0 4.59e-01 92.6% 63.0%
4032831 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.62 43.0 3.42e-01 70.6% 74.8%
3596676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.74e-01 92.6% 75.6%
3998029 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 4.09e-01 82.4% 76.2%
3274551 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 50.0 4.88e-01 89.7% 85.3%
3535298 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 51.0 4.70e-01 92.6% 71.1%
3768095 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 51.0 4.59e-01 92.6% 66.3%
3501699 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.84e-01 92.6% 78.8%
3465976 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 5.08e-01 89.7% 100.0%
5063188 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.61 48.0 3.42e-01 89.7% 27.4%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.46e-01 94.1% 64.2%
1114686 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.61 42.0 4.49e-01 77.9% 87.5%
3882182 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.59 43.0 3.57e-01 79.4% 69.2%
3924149 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.51e-01 79.4% 100.0%
3762030 219.1.1.14 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.59 49.0 4.03e-01 92.6% 63.2%
3469279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.22e-01 94.1% 73.3%
3931993 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.52e-01 98.5% 95.0%
4582465 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 51.0 4.36e-01 100.0% 85.5%
3933782 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.58 49.0 4.58e-01 97.1% 89.4%
3920536 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 3.86e-01 100.0% 58.1%
4995535 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.57 42.0 3.13e-01 80.9% 40.5%
3925408 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 39.0 4.26e-01 75.0% 100.0%
5002755 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.55 35.0 4.00e-01 72.1% 97.8%
4003171 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 40.0 3.86e-01 80.9% 76.2%
3960558 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 43.0 3.61e-01 89.7% 52.0%
3927663 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 40.0 4.08e-01 82.4% 100.0%
5018015 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 43.0 3.39e-01 88.2% 44.1%
5043146 3386.1.1.0 beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related 0.54 44.0 4.01e-01 92.6% 98.9%
3900957 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.77e-01 100.0% 66.2%
3935130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 38.0 4.04e-01 77.9% 98.2%
4979014 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 41.0 3.32e-01 85.3% 45.9%
3283851 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 44.0 3.68e-01 98.5% 50.8%
5057694 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 45.0 4.01e-01 98.5% 77.0%
3212847 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 40.0 2.97e-01 89.7% 29.3%
4987534 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 43.0 3.43e-01 95.6% 74.7%
4958701 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.52 43.0 3.54e-01 97.1% 97.8%
4977711 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 44.0 3.44e-01 94.1% 45.5%
4927529 1.1.5.15 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.51 39.0 3.39e-01 79.4% 57.3%
5039943 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.85e-01 97.1% 87.6%
3621943 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 44.0 3.64e-01 100.0% 85.4%
3217257 11.1.1.955 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th 0.51 45.0 3.96e-01 98.5% 79.0%
3290558 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 42.0 3.34e-01 97.1% 47.7%
57 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.50 40.0 3.09e-01 86.8% 42.5%
4928784 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.50 38.0 2.84e-01 86.8% 69.8%
3707901 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.50 43.0 3.81e-01 98.5% 74.3%
3957192 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.50 41.0 3.49e-01 95.6% 56.0%
3950331 1.1.5.15 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.50 37.0 3.86e-01 79.4% 91.7%
3749561 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.50 44.0 3.72e-01 98.5% 73.5%
3280029 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.50 43.0 3.46e-01 97.1% 51.1%