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MK448750.1__QBX18125.1__Javan393_0045__00016
Bact-VirMK448750.1__QBX18125.1__Javan393_0045__00016
Identity
- Accession:
- MK448750 ↗
- Kingdom:
- phage
Quality
77.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-42
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u9lB00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.70 | 59.0 | 4.94e-01 | 92.9% | 82.9% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 52.0 | 4.52e-01 | 81.0% | 87.3% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.68 | 57.0 | 4.20e-01 | 100.0% | 38.0% |
| 1g5bB00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.68 | 55.0 | 3.48e-01 | 92.9% | 18.6% |
| 1ixkA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.66 | 50.0 | 3.91e-01 | 97.6% | 36.2% |
| 1rp5A03 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 47.0 | 3.88e-01 | 92.9% | 42.2% |
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.61 | 55.0 | 3.34e-01 | 100.0% | 23.8% |
| 3idwA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.61 | 48.0 | 4.24e-01 | 92.9% | 89.4% |
| 4y0bA00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.59 | 44.0 | 3.17e-01 | 83.3% | 39.3% |
| 3otdA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.59 | 51.0 | 3.18e-01 | 100.0% | 37.1% |
| 3kjxD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 43.0 | 3.84e-01 | 83.3% | 59.0% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 50.0 | 4.28e-01 | 97.6% | 64.6% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.56 | 39.0 | 3.52e-01 | 78.6% | 75.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3612189 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 58.0 | 5.69e-01 | 88.1% | 84.4% |
| 3595001 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.70 | 58.0 | 5.67e-01 | 90.5% | 84.4% |
| 3969641 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.69 | 54.0 | 4.36e-01 | 85.7% | 67.5% |
| 4303963 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.67 | 52.0 | 4.21e-01 | 83.3% | 46.7% |
| 3924698 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.67 | 53.0 | 5.21e-01 | 88.1% | 84.4% |
| 3473478 | 103.1.1.4 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TAP_C | 0.65 | 51.0 | 4.87e-01 | 88.1% | 76.0% |
| 4133066 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.65 | 52.0 | 3.29e-01 | 100.0% | 16.2% |
| 3519552 | 2002.1.1.96 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › S-methyl_trans | 0.63 | 49.0 | 2.97e-01 | 85.7% | 14.7% |
| 3984938 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.63 | 44.0 | 3.57e-01 | 90.5% | 38.7% |
| 4072992 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.61 | 55.0 | 3.29e-01 | 100.0% | 22.9% |
| 4928203 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.61 | 55.0 | 3.53e-01 | 100.0% | 32.8% |
| 3860590 | 101.1.1.101 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 | 0.59 | 43.0 | 4.11e-01 | 78.6% | 68.0% |
| 4952465 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.59 | 52.0 | 3.70e-01 | 97.6% | 35.0% |
| 2647086 | 101.1.4.2 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI | 0.59 | 42.0 | 3.88e-01 | 76.2% | 64.3% |
| 2330636 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.58 | 51.0 | 4.74e-01 | 97.6% | 79.2% |
| 4244028 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.56 | 52.0 | 4.53e-01 | 100.0% | 70.0% |
| None | — | 0.56 | 47.0 | 2.97e-01 | 100.0% | 24.3% |