←Back to structures
MK448751.1__QBX18167.1__Javan399_0027__00029
Bact-VirMK448751.1__QBX18167.1__Javan399_0027__00029
Identity
- Accession:
- MK448751 ↗
- Kingdom:
- phage
Quality
85.4
mean pLDDT
Taxonomy
TaxID: 2548148
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-56
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4zm3B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.69 | 63.0 | 4.60e-01 | 100.0% | 52.8% |
| 3zieD00 | 3.30.110.150 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein | 0.69 | 52.0 | 4.59e-01 | 89.3% | 56.1% |
| 5i92F01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.67 | 60.0 | 4.18e-01 | 100.0% | 43.2% |
| 3l44A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.66 | 59.0 | 4.08e-01 | 100.0% | 41.0% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.66 | 46.0 | 3.38e-01 | 91.1% | 28.5% |
| 2epjA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.65 | 58.0 | 4.06e-01 | 100.0% | 32.4% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.64 | 48.0 | 3.93e-01 | 100.0% | 42.9% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.63 | 45.0 | 3.27e-01 | 85.7% | 27.6% |
| 2rb7A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.63 | 53.0 | 3.49e-01 | 98.2% | 44.3% |
| 2cy8A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 55.0 | 3.81e-01 | 100.0% | 42.4% |
| 3ofgB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 48.0 | 4.19e-01 | 98.2% | 55.2% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.62 | 42.0 | 3.90e-01 | 89.3% | 54.9% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.62 | 54.0 | 4.44e-01 | 98.2% | 55.2% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 46.0 | 3.37e-01 | 85.7% | 45.7% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.61 | 43.0 | 3.09e-01 | 100.0% | 27.5% |
| 1lshB00 | 2.20.90.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain | 0.61 | 42.0 | 3.04e-01 | 73.2% | 35.6% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.58 | 47.0 | 3.95e-01 | 100.0% | 51.0% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.58 | 49.0 | 3.54e-01 | 100.0% | 37.4% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 47.0 | 3.88e-01 | 91.1% | 56.3% |
| 2ljwA00 | 3.30.428.40 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 | 0.57 | 44.0 | 3.55e-01 | 96.4% | 44.2% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.57 | 49.0 | 3.41e-01 | 96.4% | 91.8% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 43.0 | 3.84e-01 | 92.9% | 55.8% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.57 | 46.0 | 3.19e-01 | 92.9% | 77.6% |
| 1dfuP00 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.56 | 45.0 | 3.88e-01 | 91.1% | 58.5% |
| 3rheA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 40.0 | 3.27e-01 | 91.1% | 37.7% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 37.0 | 3.37e-01 | 71.4% | 44.8% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 43.0 | 3.58e-01 | 94.6% | 83.1% |
| 2pokA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.55 | 47.0 | 3.01e-01 | 98.2% | 39.9% |
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 44.0 | 2.82e-01 | 87.5% | 35.0% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 45.0 | 3.95e-01 | 91.1% | 69.4% |
| 3cjsA00 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.55 | 42.0 | 4.18e-01 | 91.1% | 79.3% |
| 3lm4A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 38.0 | 2.97e-01 | 91.1% | 30.9% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 44.0 | 3.96e-01 | 91.1% | 75.0% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.55 | 43.0 | 2.64e-01 | 89.3% | 21.3% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 48.0 | 2.84e-01 | 100.0% | 12.9% |
| 3on7B00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.53 | 47.0 | 3.04e-01 | 100.0% | 57.2% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.53 | 42.0 | 3.64e-01 | 87.5% | 71.9% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.53 | 44.0 | 3.62e-01 | 91.1% | 88.0% |
| 2x10A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 36.0 | 2.64e-01 | 71.4% | 54.9% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 43.0 | 2.73e-01 | 94.6% | 56.6% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.53 | 42.0 | 3.61e-01 | 91.1% | 74.2% |
| 3pieC05 | 2.170.260.40 | Mainly Beta › Beta Complex › paz domain › | 0.53 | 47.0 | 3.30e-01 | 100.0% | 38.9% |
| 2icuA00 | 3.90.1680.10 | Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like | 0.52 | 41.0 | 2.90e-01 | 92.9% | 52.9% |
| 6dddH00 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.51 | 40.0 | 3.49e-01 | 91.1% | 58.1% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 39.0 | 2.71e-01 | 85.7% | 47.8% |
| 3wa7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 44.0 | 2.65e-01 | 100.0% | 37.5% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.51 | 44.0 | 3.87e-01 | 96.4% | 67.9% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.50 | 43.0 | 3.08e-01 | 100.0% | 58.9% |
| 2jwyA01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.50 | 42.0 | 3.30e-01 | 100.0% | 94.1% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.50 | 39.0 | 3.63e-01 | 91.1% | 70.1% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4990978 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 52.0 | 3.97e-01 | 96.4% | 33.8% |
| 3738504 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.68 | 53.0 | 4.19e-01 | 92.9% | 42.7% |
| 3701944 | 331.17.1.1 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 | 0.68 | 53.0 | 3.71e-01 | 85.7% | 70.3% |
| 4978010 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.66 | 58.0 | 4.68e-01 | 100.0% | 71.8% |
| 3659859 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.66 | 57.0 | 3.85e-01 | 100.0% | 74.1% |
| 3169613 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 46.0 | 3.79e-01 | 75.0% | 84.0% |
| 4069543 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.64 | 43.0 | 3.98e-01 | 71.4% | 62.7% |
| 3168940 | 109.4.1.64 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 | 0.63 | 51.0 | 3.21e-01 | 89.3% | 37.7% |
| 4043936 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.63 | 55.0 | 4.47e-01 | 98.2% | 53.3% |
| 5058130 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.62 | 57.0 | 5.15e-01 | 100.0% | 80.0% |
| 3549321 | 4.11.1.5 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 | 0.62 | 49.0 | 3.60e-01 | 89.3% | 41.9% |
| 4214180 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.62 | 49.0 | 4.06e-01 | 85.7% | 72.6% |
| 4433128 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.61 | 45.0 | 3.96e-01 | 85.7% | 58.9% |
| 4203354 | 252.2.1.9 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF27551 | 0.60 | 51.0 | 4.37e-01 | 100.0% | 78.9% |
| 4929262 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.58 | 47.0 | 3.50e-01 | 92.9% | 45.8% |
| 3207498 | 3409.1.1.3 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 | 0.58 | 50.0 | 3.03e-01 | 94.6% | 43.5% |
| 4098005 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.57 | 45.0 | 3.86e-01 | 87.5% | 75.6% |
| 3278093 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.56 | 49.0 | 3.15e-01 | 100.0% | 42.2% |
| 4999029 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.56 | 47.0 | 3.13e-01 | 98.2% | 43.7% |
| 4161236 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.55 | 44.0 | 3.85e-01 | 91.1% | 60.0% |
| 4682440 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.55 | 46.0 | 3.85e-01 | 92.9% | 73.7% |
| 4163756 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.54 | 43.0 | 3.63e-01 | 87.5% | 73.7% |
| 4995152 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.54 | 46.0 | 2.99e-01 | 98.2% | 40.8% |
| 4395520 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.54 | 44.0 | 3.72e-01 | 91.1% | 70.5% |
| 3833240 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.54 | 41.0 | 3.57e-01 | 98.2% | 51.6% |
| 3940407 | 372.2.1.1 ↗ | a+b complex topology › RNase A-like › EndoU-like › EndoU-like › XendoU | 0.54 | 46.0 | 2.94e-01 | 100.0% | 57.0% |
| 4553723 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.53 | 41.0 | 3.58e-01 | 89.3% | 73.7% |
| 5048423 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 44.0 | 3.45e-01 | 100.0% | 43.5% |
| 4049824 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.53 | 43.0 | 3.49e-01 | 94.6% | 48.7% |
| 3877761 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.53 | 45.0 | 2.82e-01 | 98.2% | 18.2% |
| 4118502 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.53 | 43.0 | 3.73e-01 | 96.4% | 56.8% |
| 4446761 | 3433.1.2.0 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain | 0.52 | 42.0 | 4.28e-01 | 100.0% | 90.9% |
| 4051652 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.52 | 43.0 | 3.68e-01 | 94.6% | 72.6% |
| 4139867 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.52 | 43.0 | 3.72e-01 | 96.4% | 56.8% |
| 3516051 | 389.1.1.1 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF | 0.52 | 32.0 | 3.56e-01 | 89.3% | 87.5% |
| 3966626 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 43.0 | 3.72e-01 | 94.6% | 73.3% |
| 4083333 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.51 | 40.0 | 3.51e-01 | 91.1% | 73.7% |
| 3926158 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.51 | 44.0 | 3.11e-01 | 96.4% | 42.9% |
| 355233 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.51 | 45.0 | 3.97e-01 | 96.4% | 67.5% |
| 4197235 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.51 | 41.0 | 3.57e-01 | 96.4% | 56.8% |