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MK448752.1__QBX18209.1__Javan405_0014__00014

Bact-Vir

MK448752.1__QBX18209.1__Javan405_0014__00014

Identity

Accession:
MK448752 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan405

TaxID: 2548151

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 121-171
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.73 43.0 4.25e-01 100.0% 53.6%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 37.0 3.51e-01 94.1% 38.3%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.68 37.0 3.67e-01 92.2% 46.4%
4mptA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 45.0 3.17e-01 100.0% 24.5%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 33.0 3.18e-01 94.1% 40.4%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.62 37.0 4.02e-01 96.1% 71.8%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 32.0 2.91e-01 94.1% 32.4%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 37.0 4.02e-01 96.1% 86.5%
3igmA00 1.20.5.2050 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 35.0 3.42e-01 92.2% 48.2%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 32.0 3.24e-01 94.1% 47.1%
2psmC01 2.20.28.230 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 43.0 4.32e-01 98.0% 78.8%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.58e-01 100.0% 64.9%
2j6pA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.54 44.0 3.33e-01 100.0% 73.8%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 36.0 3.72e-01 98.0% 75.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3507373 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.86 49.0 4.22e-01 100.0% 38.7%
3590578 2003.1.5.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.84 68.0 4.05e-01 90.2% 13.4%
3520872 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.80 46.0 4.00e-01 100.0% 38.7%
3516456 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.78 43.0 4.95e-01 96.1% 77.1%
3999532 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.76 46.0 4.91e-01 100.0% 68.9%
3623943 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.76 46.0 4.03e-01 100.0% 41.3%
3512437 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.75 44.0 4.79e-01 100.0% 72.5%
3992248 391.1.2.9 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.74 43.0 4.42e-01 100.0% 59.2%
3502359 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.72 42.0 4.58e-01 100.0% 72.5%
5069323 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 43.0 4.43e-01 100.0% 66.0%
3231088 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.66 41.0 4.40e-01 100.0% 77.5%
4026577 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.64 39.0 3.83e-01 98.0% 54.5%
3204891 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 39.0 3.45e-01 94.1% 40.0%
4941620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 36.0 3.47e-01 94.1% 46.7%
3737825 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 34.0 3.35e-01 94.1% 41.8%
4927153 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.61 39.0 3.84e-01 100.0% 60.0%
3641981 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 37.0 3.56e-01 96.1% 50.0%
4467360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 36.0 3.44e-01 94.1% 46.7%
4123274 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.61 40.0 3.99e-01 100.0% 63.6%
4243252 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 52.0 4.32e-01 100.0% 77.9%
5029687 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 36.0 3.83e-01 100.0% 68.9%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 32.0 3.10e-01 94.1% 48.3%
3715175 4.18.1.0 ↗ beta barrels › SH3 › Plus3 › Plus3 0.52 41.0 2.88e-01 94.1% 26.3%
4959499 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.50 30.0 2.49e-01 96.1% 26.0%
D2 medium residues 172-231
PDB
Domain cluster: rep: IMGVR_UViG_3300025014_000214-3300025014-Ga0210023_100002729__D116-168
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00145.24 best DNA_methylase 36.6 5.10e-09 83.3% 13.6%