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MK448754.1__QBX18328.1__Javan411_0032__00032
Bact-VirMK448754.1__QBX18328.1__Javan411_0032__00032
Identity
- Accession:
- MK448754 ↗
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 70-154
Domain cluster:
rep: KT337370.1__ALA46827.1__phiARI0923_19__00019__D10-86
D2
medium
residues 1-69
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12728.14 best | HTH_17 | 28.4 | 2.40e-06 | 40.6% | 45.1% |
| PF02954.26 | HTH_8 | 22.4 | 1.10e-04 | 31.9% | 45.2% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.80 | 58.0 | 5.87e-01 | 75.4% | 83.6% |
| 4b43A01 | 1.10.10.2480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.76 | 65.0 | 6.62e-01 | 94.2% | 95.6% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.74 | 53.0 | 5.26e-01 | 75.4% | 79.2% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.71 | 50.0 | 4.98e-01 | 75.4% | 79.5% |
| 3gp4B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.68 | 58.0 | 4.72e-01 | 95.7% | 82.3% |
| 5d8cA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.63 | 54.0 | 4.46e-01 | 95.7% | 84.9% |
| 4gewA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 46.0 | 4.45e-01 | 81.2% | 70.1% |
| 5yc9B01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.61 | 53.0 | 4.82e-01 | 100.0% | 100.0% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 32.0 | 3.32e-01 | 81.2% | 53.8% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.59 | 43.0 | 4.08e-01 | 78.3% | 85.9% |
| 3vygE00 | 1.10.472.20 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit | 0.59 | 42.0 | 3.28e-01 | 75.4% | 37.7% |
| 3t38A01 | 1.10.8.1060 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain | 0.57 | 42.0 | 4.19e-01 | 79.7% | 94.4% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 32.0 | 3.51e-01 | 75.4% | 65.5% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.56 | 40.0 | 3.14e-01 | 75.4% | 36.8% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.55 | 39.0 | 3.40e-01 | 75.4% | 54.5% |
| 3acxA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 41.0 | 2.78e-01 | 82.6% | 21.1% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.55 | 42.0 | 4.09e-01 | 87.0% | 98.8% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 38.0 | 2.72e-01 | 73.9% | 28.3% |
| 1zq9A02 | 1.10.8.480 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 37.0 | 3.33e-01 | 72.5% | 86.7% |
| 2gwlA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.52 | 38.0 | 2.85e-01 | 81.2% | 29.0% |
| 7wj9A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 39.0 | 2.63e-01 | 82.6% | 41.3% |
| 1hr7C02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 37.0 | 2.69e-01 | 79.7% | 69.8% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.50 | 36.0 | 3.46e-01 | 75.4% | 75.3% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3387184 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.84 | 58.0 | 3.63e-01 | 71.0% | 15.9% |
| 1827815 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.82 | 59.0 | 5.96e-01 | 75.4% | 82.4% |
| 4870592 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.82 | 60.0 | 4.71e-01 | 76.8% | 53.7% |
| 4210562 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.81 | 66.0 | 7.06e-01 | 88.4% | 100.0% |
| 4456842 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.80 | 62.0 | 6.58e-01 | 81.2% | 95.0% |
| 4158216 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.78 | 63.0 | 6.77e-01 | 88.4% | 98.3% |
| 4460243 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.76 | 54.0 | 5.92e-01 | 75.4% | 94.5% |
| 4519321 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.76 | 63.0 | 6.47e-01 | 89.9% | 95.4% |
| 4286215 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.75 | 51.0 | 5.30e-01 | 71.0% | 80.0% |
| 4315777 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.75 | 61.0 | 4.75e-01 | 87.0% | 43.6% |
| 3164063 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.74 | 51.0 | 5.17e-01 | 72.5% | 85.7% |
| 282935 | 3601.1.1.1 ↗ | alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg | 0.72 | 52.0 | 3.78e-01 | 76.8% | 28.1% |
| 4251581 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.72 | 52.0 | 5.34e-01 | 75.4% | 81.5% |
| 4288189 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.71 | 50.0 | 5.14e-01 | 72.5% | 78.5% |
| 3284690 | 3601.1.1.0 ↗ | alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain | 0.70 | 51.0 | 3.96e-01 | 76.8% | 35.3% |
| 3702894 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.70 | 47.0 | 5.32e-01 | 81.2% | 96.0% |
| 4944444 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.68 | 51.0 | 5.01e-01 | 81.2% | 76.0% |
| 3654733 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 52.0 | 4.83e-01 | 92.8% | 82.2% |
| 3972907 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.59 | 40.0 | 2.99e-01 | 71.0% | 98.5% |
| 4024467 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.59 | 48.0 | 3.82e-01 | 91.3% | 76.6% |
| 4563308 | 237.1.1.8 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox | 0.59 | 39.0 | 2.84e-01 | 85.5% | 22.6% |
| 3510392 | 6157.1.1.1 ↗ | alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP | 0.58 | 46.0 | 4.02e-01 | 88.4% | 96.4% |
| 3488655 | 7563.1.1.6 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related › LSDAT_euk | 0.57 | 39.0 | 2.51e-01 | 71.0% | 21.2% |
| 5001059 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.57 | 41.0 | 3.92e-01 | 75.4% | 70.0% |
| 4335699 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.57 | 41.0 | 2.92e-01 | 78.3% | 57.0% |
| 3398473 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.56 | 46.0 | 4.04e-01 | 92.8% | 80.9% |
| None | — | 0.56 | 40.0 | 2.58e-01 | 75.4% | 22.6% | |
| 4391428 | 4044.1.1.1 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane | 0.55 | 42.0 | 3.50e-01 | 87.0% | 58.5% |
| 1790834 | 3086.1.1.1 ↗ | alpha bundles › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › DAGK_prokar | 0.55 | 39.0 | 3.69e-01 | 78.3% | 61.9% |
| 3696833 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.52 | 38.0 | 3.41e-01 | 79.7% | 53.3% |
| 3229078 | 150.5.1.124 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Claudin_3 | 0.52 | 37.0 | 3.43e-01 | 78.3% | 71.6% |
| 3295355 | 1008.1.1.1 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36_C | 0.52 | 38.0 | 3.40e-01 | 81.2% | 69.5% |
| 3450594 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.52 | 36.0 | 3.25e-01 | 73.9% | 52.0% |
| 3406329 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.51 | 38.0 | 2.81e-01 | 84.1% | 39.0% |