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MK448755.1__QBX18353.1__Javan423_0007__00007

Bact-Vir

MK448755.1__QBX18353.1__Javan423_0007__00007

Identity

Accession:
MK448755 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan423

TaxID: 2548159

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-89
PDB
Domain cluster: rep: FJ236310.1__ACO83191.1__X__00028__D4-54
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 66.0 5.25e-01 100.0% 54.0%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.75 66.0 5.42e-01 100.0% 64.6%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 61.0 4.80e-01 100.0% 49.6%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 62.0 5.82e-01 100.0% 80.6%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.71 58.0 5.21e-01 94.4% 72.2%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.68 57.0 5.36e-01 100.0% 84.3%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.19e-01 74.1% 56.0%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.65 54.0 4.88e-01 100.0% 77.8%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.11e-01 79.6% 53.9%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 3.85e-01 90.7% 38.8%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.16e-01 87.0% 55.8%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.42e-01 85.2% 79.2%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 3.76e-01 90.7% 37.7%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.60 50.0 3.33e-01 98.1% 41.7%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 3.60e-01 92.6% 34.4%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.60 48.0 3.24e-01 96.3% 51.7%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.60 44.0 3.81e-01 92.6% 48.4%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.13e-01 94.4% 61.1%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 43.0 3.57e-01 81.5% 65.0%
5jrjA02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.57 41.0 4.07e-01 85.2% 72.9%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.56 39.0 2.41e-01 75.9% 37.3%
1xp8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.56 41.0 4.02e-01 85.2% 71.7%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.07e-01 96.3% 76.2%
4fe9A01 2.60.40.3640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.61e-01 94.4% 66.7%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 37.0 3.22e-01 72.2% 90.0%
2jiiA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 44.0 3.12e-01 98.1% 42.5%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.36e-01 96.3% 70.7%
5d1pA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.97e-01 92.6% 73.1%
4cgyA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.52 40.0 2.97e-01 96.3% 86.3%
2rd9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.52 42.0 3.11e-01 98.1% 82.3%
3qphA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.51e-01 94.4% 85.6%
2mdgA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 30.0 3.02e-01 98.1% 50.9%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 38.0 3.70e-01 81.5% 73.8%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 2.78e-01 75.9% 78.7%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 43.0 3.37e-01 100.0% 99.2%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589675 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.88 76.0 7.87e-01 94.4% 100.0%
3589467 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.88 77.0 6.51e-01 96.3% 60.0%
4375315 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.85 69.0 7.13e-01 90.7% 96.0%
4191032 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.85 71.0 7.29e-01 98.1% 100.0%
5082561 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.84 68.0 7.03e-01 90.7% 96.0%
5027627 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.82 74.0 7.41e-01 100.0% 100.0%
4547937 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 72.0 7.11e-01 100.0% 93.1%
2967124 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 69.0 6.32e-01 94.4% 73.9%
3278372 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 64.0 6.05e-01 90.7% 73.8%
4527613 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 65.0 5.77e-01 92.6% 62.0%
5070666 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 69.0 6.86e-01 98.1% 94.5%
3954117 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 71.0 6.10e-01 100.0% 63.5%
3952885 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 66.0 6.87e-01 92.6% 100.0%
4176315 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 65.0 6.54e-01 92.6% 90.7%
4933561 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 65.0 6.49e-01 90.7% 89.1%
4181286 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.79 59.0 6.33e-01 85.2% 97.8%
5047649 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.79 64.0 6.61e-01 90.7% 100.0%
3281256 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 69.0 6.09e-01 100.0% 67.5%
4311945 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.78 66.0 4.97e-01 94.4% 40.8%
4548007 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 67.0 5.85e-01 100.0% 63.5%
3960483 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.78 63.0 6.53e-01 92.6% 98.0%
3289439 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 66.0 6.60e-01 98.1% 94.5%
3955723 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.77 60.0 6.24e-01 90.7% 94.0%
1710781 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.77 63.0 6.32e-01 96.3% 89.3%
3953197 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.77 67.0 5.62e-01 100.0% 56.8%
3385701 101.1.9.95 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 0.77 65.0 6.46e-01 98.1% 92.7%
3589130 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.77 64.0 6.43e-01 94.4% 92.7%
5064906 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 63.0 6.34e-01 96.3% 92.7%
3941467 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 66.0 5.87e-01 100.0% 76.2%
3284986 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.76 65.0 5.06e-01 98.1% 44.2%
1068666 101.1.9.18 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 0.76 67.0 5.47e-01 100.0% 64.0%
4101677 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 66.0 4.97e-01 100.0% 40.0%
3951460 101.30.1.3 ↗ alpha arrays › HTH › Rv2175c › Rv2175c › Rv2175c_wHTH 0.76 64.0 5.38e-01 94.4% 57.8%
4994568 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.75 64.0 6.38e-01 98.1% 94.5%
3284779 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 65.0 4.98e-01 98.1% 42.4%
3290830 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 65.0 5.09e-01 98.1% 46.1%
3290892 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 64.0 5.26e-01 100.0% 52.4%
3972191 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 64.0 4.81e-01 98.1% 37.9%
4050041 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 62.0 6.01e-01 92.6% 88.3%
3975516 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 64.0 5.21e-01 98.1% 50.5%
4668445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 64.0 6.38e-01 98.1% 96.4%
3279459 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 64.0 4.93e-01 98.1% 43.1%
4932995 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.74 60.0 6.16e-01 96.3% 100.0%
3974460 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 62.0 4.76e-01 100.0% 40.8%
3949463 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 64.0 5.04e-01 100.0% 47.0%
3979434 101.1.9.101 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF1441 0.73 62.0 6.20e-01 98.1% 94.5%
5000254 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.73 60.0 6.13e-01 96.3% 100.0%
4022243 101.1.2.517 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.73 54.0 3.10e-01 79.6% 10.5%
4518241 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 63.0 5.70e-01 100.0% 72.0%
3946914 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 63.0 4.81e-01 100.0% 42.3%
4974775 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.73 59.0 5.72e-01 96.3% 83.3%
5007668 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 62.0 4.82e-01 100.0% 48.0%
4334333 101.1.9.1 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR,MerR-DNA-bind 0.73 63.0 4.70e-01 100.0% 38.6%
2168161 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.73 58.0 5.77e-01 92.6% 91.2%
3966930 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 63.0 5.03e-01 100.0% 54.5%
4992437 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 57.0 5.59e-01 92.6% 80.0%
4096952 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 62.0 4.93e-01 100.0% 54.8%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 62.0 5.54e-01 100.0% 67.5%
3588272 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 62.0 5.38e-01 100.0% 63.5%
3980766 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 61.0 4.89e-01 98.1% 57.3%
3284686 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.72 61.0 4.09e-01 100.0% 27.4%
3948487 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 62.0 4.68e-01 100.0% 40.7%
4520820 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 61.0 5.53e-01 98.1% 70.7%
3281621 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.71 60.0 5.98e-01 96.3% 94.5%
3281871 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 62.0 4.83e-01 100.0% 50.8%
3962562 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 58.0 4.77e-01 94.4% 51.4%
3946974 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 56.0 4.65e-01 100.0% 62.9%
5048315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 46.0 3.48e-01 74.1% 30.0%
5051539 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.66 51.0 4.00e-01 85.2% 43.5%
3590852 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 55.0 4.70e-01 100.0% 60.0%
4021723 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 56.0 4.74e-01 100.0% 64.2%
4933456 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.64 52.0 4.59e-01 90.7% 62.5%
5031624 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.63 52.0 4.40e-01 90.7% 55.6%
4946594 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.18e-01 90.7% 50.0%
5077394 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.62 51.0 3.98e-01 90.7% 47.0%
5009810 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.61 52.0 4.53e-01 92.6% 67.5%
3718054 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.58 34.0 2.19e-01 98.1% 10.5%
5023102 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.58 48.0 3.95e-01 98.1% 76.4%
1856688 101.1.2.35 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIF_beta 0.55 47.0 4.34e-01 100.0% 77.5%
3491614 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.55 44.0 3.95e-01 92.6% 78.8%
3941508 148.1.3.57 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF5375 0.54 41.0 3.67e-01 94.4% 84.2%
3827338 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 4.07e-01 79.6% 84.0%
4015639 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 40.0 2.52e-01 87.0% 79.3%