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MK448792.1__QBX20434.1__Javan521_0022__00022
Bact-VirMK448792.1__QBX20434.1__Javan521_0022__00022
Identity
- Accession:
- MK448792 ↗
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-70
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2awiA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.85 | 59.0 | 5.98e-01 | 94.1% | 73.1% |
| 4jcyA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.84 | 63.0 | 5.69e-01 | 94.1% | 58.7% |
| 3zhiA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.84 | 69.0 | 6.75e-01 | 95.6% | 82.2% |
| 2l3nA00 | 1.10.1050.20 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › | 0.77 | 42.0 | 3.61e-01 | 100.0% | 34.6% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 53.0 | 4.63e-01 | 79.4% | 60.2% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.70 | 48.0 | 5.15e-01 | 70.6% | 84.5% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.70 | 61.0 | 4.93e-01 | 98.5% | 73.1% |
| 1rfzA00 | 1.10.3760.10 | Mainly Alpha › Orthogonal Bundle › YutG-like › PgpA-like | 0.68 | 59.0 | 4.46e-01 | 97.1% | 70.7% |
| 6wk3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.68 | 59.0 | 4.69e-01 | 100.0% | 70.3% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 52.0 | 4.95e-01 | 86.8% | 100.0% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 46.0 | 4.47e-01 | 70.6% | 92.0% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.66 | 40.0 | 4.53e-01 | 75.0% | 85.4% |
| 3nqwA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.66 | 54.0 | 4.01e-01 | 91.2% | 61.8% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.65 | 34.0 | 3.72e-01 | 86.8% | 61.4% |
| 1vbiA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.64 | 51.0 | 4.46e-01 | 86.8% | 100.0% |
| 2fdrA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 49.0 | 4.95e-01 | 82.4% | 92.5% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.63 | 30.0 | 2.95e-01 | 73.5% | 40.8% |
| 3bg3A04 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 35.0 | 4.00e-01 | 72.1% | 78.7% |
| 3h7iA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.60 | 45.0 | 4.40e-01 | 83.8% | 97.4% |
| 2dodA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.60 | 35.0 | 3.37e-01 | 70.6% | 47.6% |
| 2a19A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.59 | 42.0 | 3.96e-01 | 76.5% | 89.4% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 45.0 | 4.30e-01 | 86.8% | 97.5% |
| 1ynjD04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.56 | 49.0 | 3.88e-01 | 100.0% | 77.2% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.56 | 39.0 | 3.96e-01 | 98.5% | 74.6% |
| 8h72B01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 44.0 | 2.94e-01 | 91.2% | 83.6% |
| 6jlzA01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.55 | 38.0 | 3.37e-01 | 73.5% | 66.7% |
| 2xzmV01 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.55 | 34.0 | 3.59e-01 | 70.6% | 68.9% |
| 1z1vA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.55 | 42.0 | 4.20e-01 | 86.8% | 100.0% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.54 | 32.0 | 3.22e-01 | 88.2% | 57.4% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.54 | 41.0 | 3.82e-01 | 82.4% | 95.5% |
| 3bbyA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 36.0 | 3.00e-01 | 79.4% | 40.2% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 37.0 | 3.26e-01 | 73.5% | 76.5% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 44.0 | 4.35e-01 | 100.0% | 86.5% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 40.0 | 4.01e-01 | 91.2% | 85.3% |
| 1t33A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 39.0 | 3.07e-01 | 85.3% | 70.9% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.51 | 36.0 | 3.17e-01 | 76.5% | 74.3% |
| 3bhwA00 | 1.10.3540.10 | Mainly Alpha › Orthogonal Bundle › fold of a uncharacterized protein from magnetospirillum magneticum › uncharacterized protein from magnetospirillum magneticum domain | 0.51 | 38.0 | 2.89e-01 | 82.4% | 46.2% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 38.0 | 3.64e-01 | 80.9% | 74.7% |
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.51 | 43.0 | 3.53e-01 | 100.0% | 63.5% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 40.0 | 3.93e-01 | 91.2% | 100.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4232911 | 101.1.4.74 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PF27520 | 0.81 | 70.0 | 6.62e-01 | 100.0% | 81.2% |
| 5053903 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 49.0 | 4.03e-01 | 70.6% | 62.5% |
| 1036939 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.71 | 53.0 | 4.83e-01 | 79.4% | 68.1% |
| 4049729 | 514.1.1.1 ↗ | alpha bundles › YutG-like › YutG-like › YutG-like › PgpA | 0.69 | 60.0 | 4.49e-01 | 97.1% | 70.3% |
| 55626 | 514.1.1.0 ↗ | alpha bundles › YutG-like › YutG-like › YutG-like | 0.68 | 59.0 | 4.49e-01 | 97.1% | 73.0% |
| 3884427 | 103.11.1.1 ↗ | alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N | 0.67 | 46.0 | 4.77e-01 | 72.1% | 75.4% |
| 4626177 | 101.32.1.0 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin | 0.65 | 43.0 | 4.06e-01 | 91.2% | 57.5% |
| 4960347 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.65 | 49.0 | 4.44e-01 | 86.8% | 58.9% |
| 3254545 | 103.11.1.0 ↗ | alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related | 0.64 | 41.0 | 4.46e-01 | 75.0% | 81.8% |
| 3506054 | 601.15.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Proteasome activator reg(alpha) › Proteasome activator reg(alpha) | 0.64 | 41.0 | 3.75e-01 | 100.0% | 47.4% |
| 3693575 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.64 | 46.0 | 4.37e-01 | 76.5% | 72.5% |
| 3506204 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.62 | 47.0 | 3.77e-01 | 83.8% | 40.7% |
| 4981384 | 3076.1.1.1 ↗ | alpha arrays › Putative triphosphoribosyl-dephospho-coA synthase › Putative triphosphoribosyl-dephospho-coA synthase › Putative triphosphoribosyl-dephospho-coA synthase › CitG | 0.62 | 43.0 | 2.87e-01 | 73.5% | 98.6% |
| 3733392 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.61 | 41.0 | 3.54e-01 | 70.6% | 51.3% |
| 4341780 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.60 | 40.0 | 4.13e-01 | 73.5% | 72.3% |
| 5060264 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.59 | 47.0 | 3.08e-01 | 91.2% | 19.1% |
| 5025666 | 7000.1.1.4 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › PF27234 | 0.58 | 40.0 | 3.24e-01 | 76.5% | 43.2% |
| 3534466 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.57 | 38.0 | 3.92e-01 | 70.6% | 72.3% |
| 4997779 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.54 | 47.0 | 3.79e-01 | 100.0% | 68.6% |
| 3906103 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.54 | 37.0 | 3.79e-01 | 70.6% | 73.8% |
| 5001990 | 4044.1.1.1 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane | 0.53 | 43.0 | 3.56e-01 | 100.0% | 48.8% |
| 4194552 | 3193.1.1.0 ↗ | alpha arrays › HopAB effectors Pto-binding domain-related › HopAB effectors Pto-binding domain-related › HopAB effectors Pto-binding domain-related | 0.53 | 39.0 | 3.69e-01 | 80.9% | 74.1% |
| 3743739 | 2485.1.1.49 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_12 | 0.53 | 41.0 | 3.10e-01 | 85.3% | 40.0% |
| 3711673 | 4299.1.1.1 ↗ | alpha arrays › BSD domain › BSD domain › BSD domain › BSD | 0.53 | 45.0 | 3.72e-01 | 100.0% | 82.3% |
| 3310266 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.53 | 39.0 | 3.88e-01 | 100.0% | 77.1% |
| 5060252 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.53 | 43.0 | 4.03e-01 | 100.0% | 71.8% |
| 3697848 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.52 | 38.0 | 2.59e-01 | 82.4% | 85.7% |
| 5058510 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 46.0 | 3.93e-01 | 100.0% | 78.2% |
| 3624464 | 197.1.1.1 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M | 0.51 | 37.0 | 3.20e-01 | 79.4% | 55.7% |
| 3927575 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.51 | 38.0 | 3.99e-01 | 98.5% | 100.0% |