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MK448804.1__QBX21080.1__Javan553_0005__00040

Bact-Vir

MK448804.1__QBX21080.1__Javan553_0005__00040

Identity

Accession:
MK448804 ↗
Kingdom:
phage

Quality

52.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan553

TaxID: 2548255

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-138
PDB
D2 high residues 143-276
PDB
D3 high residues 439-490_502-553
PDB
D4 medium residues 3-70
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7eu3E01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 51.0 4.69e-01 70.6% 59.8%
6ofsA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.61 43.0 3.01e-01 73.5% 77.6%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.61 43.0 3.01e-01 80.9% 22.9%
1bccB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 40.0 2.88e-01 75.0% 53.5%
1hr6B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 37.0 2.69e-01 70.6% 50.5%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 36.0 2.91e-01 70.6% 73.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3328410 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.54 46.0 3.43e-01 100.0% 68.7%
D5 medium residues 311-423
PDB