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MK448804.1__QBX21118.1__Javan553_0043__00002

Bact-Vir

MK448804.1__QBX21118.1__Javan553_0043__00002

Identity

Accession:
MK448804 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan553

TaxID: 2548255

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 50-157
PDB
Domain cluster: rep: NC_071085.1__YP_010683515.1__PQF11_gp31__00031__D48-140
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 30.0 4.30e-01 75.0% 84.0%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.64 45.0 4.42e-01 72.2% 98.3%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 42.0 4.27e-01 71.3% 100.0%
5c4yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 47.0 4.32e-01 80.6% 75.7%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 38.0 3.54e-01 94.4% 48.2%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 34.0 4.34e-01 82.4% 100.0%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 3.95e-01 88.9% 67.6%
3fdqA01 1.20.120.1030 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain 0.59 43.0 4.17e-01 77.8% 68.0%
3i5gC02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 32.0 3.82e-01 76.9% 80.6%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 43.0 4.38e-01 77.8% 100.0%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 37.0 3.40e-01 92.6% 48.2%
5z62E00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.57 43.0 4.36e-01 90.7% 79.8%
5cqgA03 1.10.10.2210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 39.0 4.46e-01 96.3% 98.7%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 34.0 2.95e-01 87.0% 38.8%
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.54 41.0 3.99e-01 81.5% 92.6%
5cmyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 39.0 3.66e-01 79.6% 64.8%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.50 30.0 3.46e-01 75.0% 88.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4336911 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 39.0 4.74e-01 75.0% 84.3%
3515490 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 44.0 5.24e-01 91.7% 96.0%
4179291 192.7.1.3 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.62 43.0 4.53e-01 70.4% 97.9%
3718510 109.26.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains 0.59 44.0 2.78e-01 84.3% 14.9%
4241356 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.59 37.0 3.93e-01 88.9% 71.6%
5035624 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.58 41.0 4.57e-01 94.4% 94.1%
4048253 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.58 36.0 4.14e-01 88.0% 85.0%
4021639 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 48.0 3.14e-01 90.7% 36.1%
2716427 129.1.1.1 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6PGD 0.56 39.0 3.69e-01 94.4% 60.2%
4484053 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.55 32.0 3.74e-01 81.5% 82.7%
3311830 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.55 42.0 3.96e-01 82.4% 88.9%
3695926 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 43.0 3.43e-01 88.9% 56.4%
3198222 109.4.1.653 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Thoc2 0.53 44.0 3.27e-01 93.5% 59.0%
4013270 109.4.1.169 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rad26-like_helical_rpts,Rad26-like_C,Rad26-like_N 0.51 40.0 2.77e-01 88.9% 37.4%
4022486 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.51 36.0 3.90e-01 91.7% 90.0%
3578257 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 41.0 4.05e-01 95.4% 84.3%