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MK448806.1__QBX21204.1__Javan565_0029__00037

Bact-Vir

MK448806.1__QBX21204.1__Javan565_0029__00037

Identity

Accession:
MK448806 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-134
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 40.0 5.01e-01 87.4% 90.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 43.0 4.69e-01 92.0% 71.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 37.0 4.93e-01 80.5% 93.8%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 43.0 5.14e-01 80.5% 93.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 41.0 4.73e-01 85.1% 79.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 38.0 4.66e-01 79.3% 83.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 37.0 4.17e-01 81.6% 68.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 39.0 4.82e-01 87.4% 98.1%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 41.0 3.55e-01 95.4% 42.0%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.64 48.0 3.58e-01 79.3% 82.3%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 42.0 2.81e-01 81.6% 17.4%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.64 48.0 3.70e-01 80.5% 83.1%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.17e-01 87.4% 70.2%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.21e-01 89.7% 73.5%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 42.0 3.44e-01 74.7% 58.5%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 50.0 3.76e-01 93.1% 52.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 37.0 4.18e-01 95.4% 83.6%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 4.07e-01 81.6% 73.4%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.57 43.0 4.06e-01 81.6% 67.9%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.56 36.0 4.20e-01 80.5% 96.6%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.56 48.0 4.52e-01 95.4% 84.1%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 40.0 3.90e-01 74.7% 72.9%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 4.01e-01 100.0% 90.1%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.49e-01 86.2% 59.0%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 41.0 3.31e-01 80.5% 83.6%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 39.0 3.44e-01 74.7% 64.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.90e-01 81.6% 71.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 4.08e-01 80.5% 80.5%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.79e-01 80.5% 75.0%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.89e-01 92.0% 96.9%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.53 39.0 3.24e-01 79.3% 97.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 32.0 3.59e-01 81.6% 78.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 34.0 3.83e-01 87.4% 87.7%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.53 32.0 3.44e-01 73.6% 71.2%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.53 43.0 4.11e-01 95.4% 91.7%
1droA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.60e-01 82.8% 76.2%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.89e-01 81.6% 79.3%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.73e-01 80.5% 79.8%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 45.0 4.52e-01 100.0% 91.1%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.72e-01 87.4% 86.4%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.68e-01 81.6% 75.0%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.57e-01 81.6% 69.7%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.49e-01 81.6% 81.7%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 38.0 3.33e-01 80.5% 85.9%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 35.0 3.29e-01 72.4% 100.0%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 34.0 3.10e-01 71.3% 88.2%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.73e-01 87.4% 83.3%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 41.0 5.03e-01 79.3% 89.1%
3751502 4.1.1.365 beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.72 42.0 4.65e-01 78.2% 72.9%
3296833 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.71 43.0 3.63e-01 80.5% 38.4%
4015238 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.71 42.0 3.69e-01 80.5% 40.8%
3936468 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 49.0 4.70e-01 100.0% 63.0%
3238405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 40.0 4.91e-01 87.4% 89.1%
5018860 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.69 51.0 4.24e-01 80.5% 44.7%
3852545 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 39.0 4.67e-01 87.4% 83.3%
3482225 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.68 43.0 3.70e-01 83.9% 42.3%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.83e-01 85.1% 81.4%
5080210 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.67 50.0 3.71e-01 79.3% 81.4%
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.66 42.0 4.55e-01 77.0% 76.0%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 38.0 4.04e-01 87.4% 66.7%
3244497 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.64 38.0 3.13e-01 81.6% 34.0%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.69e-01 100.0% 78.8%
3838812 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.63 46.0 3.88e-01 79.3% 74.2%
3514556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 40.0 4.44e-01 85.1% 81.4%
4079197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 36.0 3.70e-01 80.5% 61.2%
3498264 219.1.1.53 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.59 45.0 3.22e-01 81.6% 36.5%
3283509 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.58 48.0 4.50e-01 90.8% 90.8%
4940673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 34.0 4.06e-01 87.4% 88.3%
3601070 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 38.0 4.35e-01 79.3% 92.3%
848 9.1.1.8 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox 0.56 49.0 3.98e-01 100.0% 82.0%
3947700 4.8.1.25 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DSRB 0.56 39.0 4.32e-01 82.8% 98.4%
4026222 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.62e-01 80.5% 69.7%
138255 9.1.1.6 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE 0.56 48.0 4.51e-01 95.4% 83.3%
5077969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 36.0 3.72e-01 87.4% 70.0%
4268386 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.10e-01 88.5% 87.1%
4643894 9.1.1.8 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox 0.56 49.0 4.05e-01 100.0% 91.9%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.56 38.0 3.93e-01 90.8% 76.2%
3398765 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.55 46.0 3.33e-01 92.0% 84.3%
4248693 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 40.0 3.29e-01 81.6% 49.2%
4422252 4.1.1.455 beta barrels › SH3 › SH3 › SH3 › DSRB 0.55 36.0 4.13e-01 79.3% 100.0%
169039 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.55 39.0 3.44e-01 74.7% 64.9%
4011774 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 40.0 3.07e-01 79.3% 51.9%
3425872 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.54 41.0 4.06e-01 79.3% 84.4%
3276072 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.54 41.0 3.90e-01 81.6% 70.5%
3619070 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.54 42.0 3.46e-01 85.1% 83.6%
3713703 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.70e-01 79.3% 62.6%
3302391 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.54 45.0 3.86e-01 90.8% 60.0%
3280720 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.54 44.0 3.59e-01 92.0% 85.1%
3260374 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.54 40.0 4.02e-01 82.8% 79.6%
3658750 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.54 40.0 3.63e-01 81.6% 73.6%
3402045 220.1.1.158 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.53 40.0 3.83e-01 81.6% 80.0%
3512363 3794.1.1.1 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.53 44.0 3.78e-01 93.1% 86.2%
None 0.53 47.0 3.03e-01 96.6% 22.0%
3624046 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.69e-01 82.8% 74.2%
3816455 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.53 43.0 3.74e-01 87.4% 59.2%
2137682 1.1.5.32 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR 0.53 39.0 3.77e-01 79.3% 90.2%
3377696 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.53 42.0 3.24e-01 86.2% 61.5%
3254788 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 39.0 3.36e-01 80.5% 47.6%
3947980 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.53 39.0 3.78e-01 78.2% 84.0%
3265019 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 40.0 3.86e-01 82.8% 70.9%
3300226 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.53 42.0 4.42e-01 87.4% 92.5%
3816041 2004.1.1.299 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.53 37.0 2.66e-01 74.7% 24.0%
3276218 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.53 39.0 3.52e-01 80.5% 83.2%
5063188 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.53 41.0 3.18e-01 87.4% 54.9%
3884661 4.1.1.382 beta barrels › SH3 › SH3 › SH3 › PF31078 0.52 42.0 3.93e-01 87.4% 75.5%
3252263 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 39.0 3.79e-01 81.6% 72.0%
4246480 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.52 39.0 3.78e-01 78.2% 88.4%
3668420 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.52 46.0 3.57e-01 97.7% 48.9%
5043037 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.52 38.0 3.72e-01 80.5% 89.0%
3402573 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 39.0 3.66e-01 82.8% 65.2%
3317821 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 38.0 4.08e-01 79.3% 89.3%
3709314 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.55e-01 81.6% 76.7%
2466103 265.1.1.2 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Phage_coat 0.52 36.0 3.14e-01 72.4% 64.9%
3895620 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 40.0 3.26e-01 83.9% 72.7%
2841854 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.51 39.0 3.43e-01 82.8% 97.7%
4638995 71.1.1.15 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 0.50 43.0 3.42e-01 98.9% 88.1%