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MK448810.1__QBX21425.1__Javan573_0038__00038
Bact-VirMK448810.1__QBX21425.1__Javan573_0038__00038
Identity
- Accession:
- MK448810 ↗
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-94
Domain cluster:
representative
D2
medium
residues 95-153
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14265.12 best | DUF4355 | 28.9 | 1.50e-06 | 98.3% | 41.1% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l8qA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.84 | 62.0 | 6.71e-01 | 79.7% | 100.0% |
| 2z4sA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.83 | 66.0 | 6.16e-01 | 86.4% | 75.0% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.80 | 61.0 | 5.57e-01 | 81.4% | 64.5% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.79 | 62.0 | 5.60e-01 | 88.1% | 67.5% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.78 | 63.0 | 5.65e-01 | 89.8% | 68.7% |
| 2kebA00 | 1.10.8.530 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain | 0.74 | 62.0 | 5.62e-01 | 93.2% | 69.2% |
| 2dbdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.72 | 51.0 | 4.12e-01 | 74.6% | 43.9% |
| 1jkwA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.70 | 59.0 | 4.28e-01 | 96.6% | 41.5% |
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.69 | 54.0 | 3.85e-01 | 94.9% | 28.0% |
| 2n50A00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.69 | 48.0 | 4.41e-01 | 86.4% | 55.7% |
| 3vkhB07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 49.0 | 3.33e-01 | 74.6% | 30.2% |
| 3tw6A06 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 49.0 | 5.05e-01 | 96.6% | 90.7% |
| 2q14B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.66 | 54.0 | 3.64e-01 | 91.5% | 70.8% |
| 4neoA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.65 | 49.0 | 4.45e-01 | 83.1% | 59.0% |
| 3ww3A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.65 | 53.0 | 3.53e-01 | 91.5% | 84.2% |
| 3kfuG01 | 1.10.20.60 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Glu-tRNAGln amidotransferase C subunit, N-terminal domain | 0.65 | 40.0 | 4.68e-01 | 78.0% | 97.4% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.64 | 47.0 | 3.42e-01 | 76.3% | 33.8% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 43.0 | 3.85e-01 | 72.9% | 77.6% |
| 1jg1A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 51.0 | 3.64e-01 | 98.3% | 91.2% |
| 2oceA01 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.63 | 48.0 | 3.85e-01 | 81.4% | 44.2% |
| 2cgqA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.62 | 46.0 | 4.32e-01 | 81.4% | 64.9% |
| 1vsgA02 | 1.10.470.10 | Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 | 0.61 | 52.0 | 3.78e-01 | 93.2% | 97.5% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 54.0 | 4.12e-01 | 100.0% | 59.0% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.60 | 40.0 | 3.52e-01 | 81.4% | 48.2% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.60 | 49.0 | 3.31e-01 | 93.2% | 33.3% |
| 2y0oA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 43.0 | 3.17e-01 | 78.0% | 87.7% |
| 6azyA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.59 | 44.0 | 3.50e-01 | 83.1% | 85.5% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 3.62e-01 | 74.6% | 79.5% |
| 1fioA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 51.0 | 3.48e-01 | 94.9% | 54.7% |
| 4hteA02 | 1.20.58.1740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 45.0 | 3.70e-01 | 88.1% | 49.6% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.57 | 46.0 | 3.14e-01 | 98.3% | 90.1% |
| 3tjtA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.56 | 42.0 | 3.96e-01 | 91.5% | 67.6% |
| 4gxbA02 | 1.20.80.60 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.55 | 37.0 | 3.69e-01 | 71.2% | 79.0% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 44.0 | 3.81e-01 | 89.8% | 81.3% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 45.0 | 3.58e-01 | 91.5% | 83.3% |
| 2hgkA01 | 1.20.1440.40 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like | 0.50 | 40.0 | 3.35e-01 | 88.1% | 81.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032135 | 632.2.1.39 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF4355 | 0.93 | 87.0 | 7.70e-01 | 100.0% | 75.0% |
| 3191809 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.90 | 78.0 | 6.20e-01 | 93.2% | 52.7% |
| 4982784 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.88 | 71.0 | 7.12e-01 | 86.4% | 90.0% |
| 4121495 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 71.0 | 6.47e-01 | 86.4% | 72.0% |
| 4974262 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.87 | 70.0 | 6.97e-01 | 86.4% | 90.0% |
| 3603655 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.84 | 64.0 | 3.99e-01 | 81.4% | 17.3% |
| 4067861 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.83 | 70.0 | 6.12e-01 | 91.5% | 65.9% |
| 4117160 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.82 | 66.0 | 5.94e-01 | 88.1% | 68.8% |
| 4060907 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.82 | 69.0 | 6.25e-01 | 93.2% | 71.2% |
| 4646832 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 62.0 | 4.17e-01 | 81.4% | 23.8% |
| 4929054 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.81 | 61.0 | 4.13e-01 | 79.7% | 24.5% |
| 4089409 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.81 | 70.0 | 6.28e-01 | 94.9% | 72.5% |
| 4246144 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.81 | 68.0 | 6.16e-01 | 93.2% | 71.2% |
| 3385989 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.81 | 66.0 | 6.23e-01 | 89.8% | 80.0% |
| 4594380 | 148.1.3.49 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid | 0.80 | 67.0 | 6.06e-01 | 91.5% | 70.0% |
| 3644157 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.80 | 66.0 | 6.81e-01 | 89.8% | 94.5% |
| 3602256 | 101.1.2.542 ↗ | alpha arrays › HTH › HTH › winged helix domain › ATPase_2 | 0.80 | 63.0 | 5.81e-01 | 84.7% | 69.3% |
| 4635810 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.78 | 69.0 | 6.68e-01 | 98.3% | 90.8% |
| 3519328 | 148.1.3.18 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C | 0.78 | 67.0 | 5.69e-01 | 94.9% | 62.1% |
| 4028941 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.78 | 68.0 | 6.50e-01 | 98.3% | 84.3% |
| 5014348 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.77 | 64.0 | 6.39e-01 | 91.5% | 93.3% |
| 4204950 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 61.0 | 5.57e-01 | 91.5% | 70.0% |
| 3838403 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.74 | 62.0 | 5.62e-01 | 94.9% | 71.2% |
| 3493491 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 56.0 | 3.60e-01 | 91.5% | 39.6% |
| 5007277 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.68 | 54.0 | 4.78e-01 | 86.4% | 88.2% |
| 4993551 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.68 | 60.0 | 4.93e-01 | 98.3% | 99.0% |
| 4384656 | 632.2.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like | 0.67 | 55.0 | 5.63e-01 | 93.2% | 100.0% |
| 3487231 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.67 | 56.0 | 4.06e-01 | 96.6% | 73.3% |
| 4092407 | 148.1.3.198 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Bac_DnaA | 0.67 | 56.0 | 3.64e-01 | 94.9% | 78.5% |
| 3949317 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.66 | 54.0 | 4.55e-01 | 93.2% | 90.5% |
| 4564250 | 103.1.1.67 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UPF0515 | 0.64 | 49.0 | 4.44e-01 | 93.2% | 58.9% |
| 3287250 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.62 | 47.0 | 4.09e-01 | 94.9% | 51.6% |
| 4952657 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.62 | 46.0 | 4.58e-01 | 79.7% | 88.3% |
| 4956012 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.62 | 52.0 | 4.41e-01 | 98.3% | 82.9% |
| 4385935 | 5000.4.1.1 ↗ | alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N | 0.61 | 46.0 | 3.07e-01 | 83.1% | 58.4% |
| 4329038 | 375.1.9.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Insulin | 0.59 | 41.0 | 3.46e-01 | 71.2% | 47.8% |
| 5057581 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.59 | 47.0 | 4.39e-01 | 88.1% | 73.3% |
| 3448829 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.58 | 50.0 | 3.31e-01 | 100.0% | 34.8% |
| 3250178 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 47.0 | 3.46e-01 | 91.5% | 91.0% |
| 3896730 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 48.0 | 3.60e-01 | 94.9% | 96.3% |
| 4305197 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.55 | 42.0 | 2.94e-01 | 84.7% | 39.0% |
| 3739924 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.53 | 47.0 | 3.91e-01 | 100.0% | 81.0% |
| 4420339 | 603.5.1.0 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like | 0.52 | 45.0 | 3.66e-01 | 94.9% | 54.5% |
| 4323518 | 518.1.1.1 ↗ | alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N | 0.51 | 34.0 | 3.41e-01 | 83.1% | 66.7% |
| 3972588 | 2498.1.1.31 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M90 | 0.51 | 38.0 | 2.62e-01 | 84.7% | 38.8% |