←Back to structures
MK448810.1__QBX21429.1__Javan573_0042__00042
Bact-VirMK448810.1__QBX21429.1__Javan573_0042__00042
Identity
- Accession:
- MK448810 ↗
- Kingdom:
- phage
Quality
72.7
mean pLDDT
Cluster
View cluster (247 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-101
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a35A02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.69 | 56.0 | 5.05e-01 | 100.0% | 64.1% |
| 3u28C00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.66 | 53.0 | 4.79e-01 | 100.0% | 64.1% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.65 | 59.0 | 4.85e-01 | 100.0% | 60.0% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.63 | 53.0 | 5.06e-01 | 93.9% | 79.7% |
| 2kcaA00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.63 | 54.0 | 4.67e-01 | 100.0% | 69.7% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.62 | 51.0 | 4.22e-01 | 100.0% | 49.6% |
| 1p97A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 43.0 | 3.73e-01 | 75.8% | 96.5% |
| 1mc0A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.62 | 50.0 | 3.88e-01 | 92.4% | 68.4% |
| 1pj5A03 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.61 | 52.0 | 3.77e-01 | 97.0% | 38.4% |
| 4ffuB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 41.0 | 3.11e-01 | 100.0% | 30.0% |
| 4aqzA00 | 2.60.40.3470 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 53.0 | 4.18e-01 | 98.5% | 73.9% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.60 | 51.0 | 4.30e-01 | 100.0% | 65.6% |
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 41.0 | 3.77e-01 | 72.7% | 70.5% |
| 2iteA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 52.0 | 4.30e-01 | 100.0% | 54.5% |
| 3exzB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 39.0 | 3.15e-01 | 71.2% | 83.0% |
| 1nf3C00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.57 | 49.0 | 4.04e-01 | 98.5% | 89.4% |
| 2l8kA00 | 3.30.1330.220 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Arterivirus nonstructural protein 7 alpha | 0.57 | 51.0 | 4.15e-01 | 100.0% | 74.8% |
| 4q9bA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 48.0 | 4.28e-01 | 100.0% | 79.2% |
| 3lvtA05 | 2.60.40.2220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 48.0 | 4.59e-01 | 97.0% | 93.5% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 48.0 | 4.55e-01 | 100.0% | 81.2% |
| 2w59A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 48.0 | 4.26e-01 | 100.0% | 81.0% |
| 3c8cB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 44.0 | 3.69e-01 | 90.9% | 64.6% |
| 2qa1A02 | 3.30.70.2450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 40.0 | 3.87e-01 | 78.8% | 70.9% |
| 1u04A04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 39.0 | 2.76e-01 | 75.8% | 32.1% |
| 2pliA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.55 | 43.0 | 4.04e-01 | 87.9% | 98.8% |
| 3mjgX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 48.0 | 4.25e-01 | 100.0% | 70.3% |
| 7uvpA03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.55 | 45.0 | 3.61e-01 | 95.5% | 76.6% |
| 3bp6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 46.0 | 4.26e-01 | 100.0% | 72.7% |
| 8ciwA02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.54 | 44.0 | 3.64e-01 | 97.0% | 83.5% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.53 | 39.0 | 3.37e-01 | 84.8% | 64.5% |
| 6jn7A01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.52 | 45.0 | 3.38e-01 | 100.0% | 69.7% |
| 5h80B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 42.0 | 2.97e-01 | 95.5% | 65.3% |
| 2x9aA00 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.52 | 35.0 | 3.67e-01 | 71.2% | 82.0% |
| 1yvuA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 37.0 | 2.74e-01 | 81.8% | 66.8% |
| 4bfeA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.81e-01 | 100.0% | 74.1% |
| 4ofyD03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.81e-01 | 100.0% | 71.9% |
| 1shyB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 42.0 | 2.62e-01 | 98.5% | 98.4% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4092486 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.80 | 58.0 | 4.18e-01 | 98.5% | 28.3% |
| 4034130 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 68.0 | 5.98e-01 | 98.5% | 66.0% |
| 4260208 | 1.1.13.62 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 | 0.75 | 66.0 | 5.61e-01 | 95.5% | 68.6% |
| 4669352 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.74 | 66.0 | 5.52e-01 | 98.5% | 85.5% |
| 3963092 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.71 | 58.0 | 5.08e-01 | 100.0% | 61.1% |
| 4057590 | 1.1.5.86 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 | 0.66 | 60.0 | 4.66e-01 | 100.0% | 56.4% |
| 3265288 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 53.0 | 4.65e-01 | 100.0% | 57.1% |
| 169594 | 1.1.13.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 | 0.65 | 59.0 | 4.85e-01 | 100.0% | 60.0% |
| 3267248 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 53.0 | 4.71e-01 | 100.0% | 64.2% |
| 3725920 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.64 | 50.0 | 4.43e-01 | 84.8% | 70.5% |
| 4154363 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.63 | 55.0 | 4.49e-01 | 100.0% | 53.1% |
| 3253132 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 51.0 | 4.62e-01 | 100.0% | 64.2% |
| 3604584 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 55.0 | 4.62e-01 | 100.0% | 75.5% |
| 3911664 | 11.1.5.106 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CNRIP1 | 0.61 | 53.0 | 4.10e-01 | 100.0% | 54.2% |
| 3251462 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 53.0 | 4.64e-01 | 100.0% | 69.0% |
| 4656850 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.60 | 52.0 | 3.50e-01 | 100.0% | 56.4% |
| 4633844 | 223.1.1.72 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES2 | 0.60 | 49.0 | 3.40e-01 | 90.9% | 35.3% |
| 3471644 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.60 | 49.0 | 3.07e-01 | 93.9% | 30.5% |
| 3277508 | 11.1.1.793 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 | 0.60 | 51.0 | 4.50e-01 | 100.0% | 65.0% |
| 3742562 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 46.0 | 4.01e-01 | 100.0% | 52.2% |
| 3268578 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 50.0 | 4.36e-01 | 100.0% | 67.3% |
| 3905151 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.59 | 51.0 | 4.16e-01 | 100.0% | 58.5% |
| 1944061 | 11.1.1.279 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TarS_C1 | 0.59 | 52.0 | 4.11e-01 | 100.0% | 50.0% |
| 4170981 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.58 | 49.0 | 4.33e-01 | 100.0% | 63.8% |
| 5060557 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.58 | 48.0 | 3.18e-01 | 97.0% | 58.7% |
| 3274257 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 51.0 | 4.21e-01 | 100.0% | 69.2% |
| 2774000 | 881.4.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C | 0.58 | 47.0 | 4.13e-01 | 98.5% | 59.2% |
| 3625604 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.58 | 49.0 | 4.31e-01 | 100.0% | 71.4% |
| 3288169 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 46.0 | 4.41e-01 | 90.9% | 87.5% |
| 3518940 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.57 | 48.0 | 4.17e-01 | 100.0% | 94.5% |
| 3239738 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 49.0 | 4.22e-01 | 100.0% | 61.0% |
| 3289002 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.56 | 48.0 | 3.10e-01 | 100.0% | 45.0% |
| 4001048 | 11.1.1.233 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase | 0.56 | 45.0 | 4.10e-01 | 100.0% | 65.6% |
| 4295277 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 45.0 | 3.52e-01 | 90.9% | 46.0% |
| 3547494 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.55 | 48.0 | 4.00e-01 | 100.0% | 69.2% |
| 4270552 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.55 | 48.0 | 4.22e-01 | 100.0% | 72.0% |
| 5035873 | 12.1.1.34 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 | 0.54 | 46.0 | 4.18e-01 | 95.5% | 88.9% |
| 3263966 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 48.0 | 4.12e-01 | 100.0% | 64.8% |
| 3900647 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 46.0 | 4.09e-01 | 100.0% | 66.3% |
| 3582474 | 243.9.1.2 ↗ | a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › Maf1 | 0.54 | 43.0 | 3.24e-01 | 90.9% | 98.9% |
| 3165921 | 881.4.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C | 0.54 | 42.0 | 3.80e-01 | 95.5% | 60.0% |
| 4008034 | 223.1.1.113 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 | 0.54 | 42.0 | 3.25e-01 | 89.4% | 48.8% |
| 3896294 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.54 | 46.0 | 4.14e-01 | 100.0% | 70.5% |
| 3904976 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.53 | 47.0 | 4.06e-01 | 100.0% | 94.3% |
| 3983134 | 223.1.1.113 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 | 0.53 | 43.0 | 3.82e-01 | 90.9% | 80.0% |
| 3843271 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 47.0 | 4.08e-01 | 100.0% | 66.7% |
| 3215328 | 331.3.1.20 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C | 0.53 | 35.0 | 2.46e-01 | 100.0% | 19.1% |
| 3892562 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 47.0 | 3.74e-01 | 100.0% | 69.2% |
| 3241614 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 38.0 | 3.07e-01 | 84.8% | 37.2% |
| 3211247 | 11.1.1.233 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase | 0.52 | 43.0 | 3.99e-01 | 100.0% | 72.9% |
| 3657329 | 6.1.1.25 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 | 0.51 | 43.0 | 3.36e-01 | 98.5% | 49.7% |
| 3771502 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.51 | 44.0 | 3.87e-01 | 100.0% | 67.0% |
| 3440523 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.50 | 36.0 | 2.53e-01 | 98.5% | 22.7% |