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MK448812.1__QBX21506.1__Javan577_0021__00021
Bact-VirMK448812.1__QBX21506.1__Javan577_0021__00021
Identity
- Accession:
- MK448812 ↗
- Kingdom:
- phage
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-87
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6jimB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 62.0 | 5.06e-01 | 100.0% | 67.8% |
| 2hyiC02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 62.0 | 4.77e-01 | 100.0% | 58.7% |
| 3vkwA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 62.0 | 5.03e-01 | 100.0% | 54.9% |
| 7f8eA01 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.68 | 55.0 | 3.96e-01 | 89.3% | 84.5% |
| 4n6fA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 50.0 | 3.52e-01 | 80.0% | 52.1% |
| 1wcwA02 | 3.40.50.10090 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 59.0 | 5.06e-01 | 98.7% | 83.2% |
| 3pdiB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.65 | 57.0 | 4.68e-01 | 100.0% | 62.1% |
| 2csuA02 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.63 | 49.0 | 4.02e-01 | 84.0% | 64.5% |
| 1lwdA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.63 | 53.0 | 3.41e-01 | 98.7% | 20.8% |
| 2jzdA01 | 3.40.220.20 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Nsp3, SUD-M subdomain | 0.63 | 54.0 | 4.66e-01 | 100.0% | 67.2% |
| 2k0zA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.62 | 45.0 | 4.04e-01 | 94.7% | 53.6% |
| 1b6sA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 43.0 | 4.40e-01 | 85.3% | 78.6% |
| 3outA02 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 50.0 | 4.51e-01 | 94.7% | 84.3% |
| 3od1A02 | 3.40.50.12590 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 42.0 | 4.57e-01 | 85.3% | 96.6% |
| 2a3nA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.60 | 51.0 | 4.09e-01 | 100.0% | 50.9% |
| 3lkdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 51.0 | 3.54e-01 | 100.0% | 39.4% |
| 3c97A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 42.0 | 4.64e-01 | 88.0% | 100.0% |
| 4zpjA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 45.0 | 3.36e-01 | 85.3% | 50.5% |
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 50.0 | 3.96e-01 | 98.7% | 51.9% |
| 5t5dA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.58 | 48.0 | 4.02e-01 | 100.0% | 56.7% |
| 3mw8A01 | 3.40.50.10090 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 46.0 | 4.04e-01 | 92.0% | 57.3% |
| 3g0tA03 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 49.0 | 3.68e-01 | 100.0% | 61.4% |
| 2kx7A00 | 3.40.50.11620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase RcsD, RcsD-ABL domain | 0.57 | 40.0 | 3.58e-01 | 88.0% | 49.5% |
| 2wjwA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 49.0 | 3.93e-01 | 100.0% | 66.9% |
| 3lfjB00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.57 | 48.0 | 3.87e-01 | 100.0% | 51.8% |
| 5ereA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 49.0 | 4.12e-01 | 100.0% | 73.0% |
| 3bl4A02 | 3.40.970.30 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › yp_829618.1 like domains | 0.57 | 35.0 | 4.08e-01 | 74.7% | 95.8% |
| 2o1sA02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.57 | 49.0 | 3.83e-01 | 100.0% | 42.9% |
| 1vluB02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.57 | 48.0 | 3.98e-01 | 98.7% | 78.1% |
| 3ke8A01 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.56 | 48.0 | 4.29e-01 | 100.0% | 78.8% |
| 7f1uA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 47.0 | 3.39e-01 | 100.0% | 41.5% |
| 5t3oA02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 46.0 | 3.83e-01 | 94.7% | 74.1% |
| 5mp7A02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 46.0 | 3.91e-01 | 100.0% | 58.1% |
| 1al3A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 46.0 | 4.27e-01 | 100.0% | 83.2% |
| 3zwfA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 47.0 | 3.27e-01 | 100.0% | 37.1% |
| 1gxlA01 | 1.20.1060.20 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › | 0.53 | 39.0 | 3.33e-01 | 77.3% | 71.4% |
| 1utbB02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 45.0 | 4.18e-01 | 98.7% | 83.8% |
| 2q5cA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 40.0 | 3.73e-01 | 85.3% | 64.9% |
| 2po3A01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 44.0 | 3.31e-01 | 100.0% | 47.2% |
| 2oyrA01 | 3.40.1630.10 | Alpha Beta › 3-Layer(aba) Sandwich › S-adenosyl-L-methionine-dependent methyltransferases › YhiQ-like domain | 0.52 | 30.0 | 3.31e-01 | 76.0% | 72.7% |
| 4toiA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.52 | 44.0 | 3.42e-01 | 100.0% | 41.0% |
| 4wesB02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 40.0 | 3.68e-01 | 85.3% | 77.9% |
| 1h1lD02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 38.0 | 3.49e-01 | 84.0% | 72.7% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4950792 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.74 | 66.0 | 4.46e-01 | 100.0% | 73.0% |
| 4027001 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.68 | 61.0 | 4.17e-01 | 100.0% | 51.0% |
| 4427116 | 2004.1.1.224 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA | 0.67 | 59.0 | 4.20e-01 | 100.0% | 56.2% |
| 3165324 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.66 | 46.0 | 4.73e-01 | 86.7% | 78.6% |
| 3686253 | 874.1.1.1 ↗ | a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge | 0.66 | 51.0 | 3.54e-01 | 81.3% | 70.9% |
| 3944293 | 2004.1.1.200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 | 0.64 | 54.0 | 3.87e-01 | 100.0% | 30.4% |
| 4032639 | 2003.1.1.11 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3Beta_HSD | 0.61 | 53.0 | 3.50e-01 | 100.0% | 26.8% |
| 5035412 | 7526.1.1.1 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2 | 0.60 | 45.0 | 3.98e-01 | 80.0% | 56.2% |
| 3279581 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.59 | 51.0 | 3.69e-01 | 100.0% | 42.2% |
| 4326291 | 7591.1.1.1 ↗ | a/b three-layered sandwiches › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › LpxK | 0.59 | 49.0 | 4.52e-01 | 96.0% | 83.0% |
| 4082706 | 7588.1.1.1 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB | 0.58 | 49.0 | 4.36e-01 | 100.0% | 82.5% |
| 3949007 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.58 | 49.0 | 3.70e-01 | 97.3% | 56.0% |
| 1907456 | 7537.1.1.1 ↗ | a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb | 0.58 | 48.0 | 4.02e-01 | 100.0% | 56.7% |
| 4977308 | 7526.1.1.0 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 | 0.58 | 45.0 | 3.89e-01 | 84.0% | 55.7% |
| 141634 | 7537.1.1.1 ↗ | a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb | 0.57 | 48.0 | 3.87e-01 | 100.0% | 52.1% |
| 4165293 | 7591.1.1.1 ↗ | a/b three-layered sandwiches › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › LpxK | 0.57 | 47.0 | 4.43e-01 | 94.7% | 85.3% |
| 4199435 | 7588.1.1.1 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB | 0.57 | 48.0 | 4.16e-01 | 98.7% | 62.4% |
| 1556227 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.57 | 44.0 | 3.85e-01 | 86.7% | 68.3% |
| 5065356 | 2003.1.5.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD | 0.56 | 49.0 | 3.69e-01 | 100.0% | 49.2% |
| 4263325 | 7574.1.1.0 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) | 0.56 | 47.0 | 3.67e-01 | 100.0% | 40.5% |
| 5038922 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.56 | 45.0 | 4.44e-01 | 88.0% | 87.5% |
| 4089253 | 7588.1.1.1 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB | 0.56 | 47.0 | 4.51e-01 | 100.0% | 84.4% |
| 4678496 | 7588.1.1.1 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB | 0.55 | 47.0 | 4.21e-01 | 100.0% | 70.8% |
| 4633070 | 7588.1.1.1 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB | 0.55 | 47.0 | 4.13e-01 | 100.0% | 66.7% |
| 4012578 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.55 | 46.0 | 3.65e-01 | 100.0% | 69.1% |
| 3741496 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.55 | 44.0 | 3.69e-01 | 92.0% | 50.0% |
| 5024272 | 7597.1.1.0 ↗ | a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain | 0.54 | 42.0 | 3.68e-01 | 88.0% | 66.4% |
| 3604536 | 2003.1.1.65 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 | 0.54 | 45.0 | 3.76e-01 | 100.0% | 49.3% |
| 5047779 | 2003.1.1.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CoA_binding_2 | 0.54 | 44.0 | 3.74e-01 | 92.0% | 53.8% |
| 4054605 | 7591.1.1.1 ↗ | a/b three-layered sandwiches › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › LpxK | 0.54 | 45.0 | 4.19e-01 | 100.0% | 77.1% |
| 3088917 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.54 | 46.0 | 4.27e-01 | 98.7% | 86.7% |
| 5080097 | 316.2.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like | 0.54 | 41.0 | 3.21e-01 | 81.3% | 58.7% |
| 4361858 | 7588.1.1.1 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB | 0.53 | 44.0 | 4.32e-01 | 100.0% | 88.2% |
| 3201743 | 2007.6.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 | 0.53 | 44.0 | 3.24e-01 | 100.0% | 34.5% |
| 3969205 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.53 | 44.0 | 4.18e-01 | 98.7% | 86.3% |
| 4028341 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.50 | 42.0 | 3.10e-01 | 97.3% | 69.3% |
| 5001352 | 7526.1.1.1 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2 | 0.50 | 38.0 | 3.35e-01 | 84.0% | 54.2% |
| 5044253 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.50 | 37.0 | 3.57e-01 | 81.3% | 67.8% |
D2
medium
residues 104-172
Domain cluster:
representative