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MK448817.1__QBX21730.1__Javan59_0001__00059

Bact-Vir

MK448817.1__QBX21730.1__Javan59_0001__00059

Identity

Accession:
MK448817 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan59

TaxID: 2548277

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-89
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14690.12 best Zn_ribbon_ISL3 43.0 6.70e-11 52.8% 97.9%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.57 41.0 3.19e-01 76.4% 98.5%
3fvyA03 3.30.70.2600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 44.0 4.68e-01 88.8% 100.0%
2jemA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.56 46.0 3.40e-01 89.9% 68.5%
1kopA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.55 45.0 3.38e-01 89.9% 60.1%
3bypA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.54 44.0 4.62e-01 89.9% 96.3%
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.54 39.0 3.03e-01 78.7% 94.8%
1m4wA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.53 43.0 3.41e-01 91.0% 65.5%
4jlxA02 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.53 46.0 3.75e-01 96.6% 94.6%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 4.07e-01 87.6% 90.8%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 37.0 3.09e-01 73.0% 92.2%
3tr3A00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.53 40.0 4.26e-01 87.6% 93.5%
4iuwA02 1.10.1380.10 Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2 0.51 38.0 2.65e-01 80.9% 41.9%
2proC01 3.30.300.50 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 31.0 3.39e-01 83.1% 77.6%
4ftfA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 40.0 3.71e-01 88.8% 67.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3987572 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.91 81.0 6.89e-01 94.4% 62.2%
3987701 375.1.1.90 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ISL3 0.87 65.0 7.00e-01 77.5% 92.0%
3501262 101.1.6.18 ↗ alpha arrays › HTH › HTH › TrpR › Zn_ribbon_ISL3 0.81 71.0 6.00e-01 95.5% 62.8%
3947895 4.26.1.4 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › zf-IS66 0.79 54.0 5.98e-01 74.2% 88.6%
3590401 375.1.1.90 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ISL3 0.78 68.0 5.73e-01 94.4% 64.1%
3987874 375.1.1.253 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.78 54.0 5.89e-01 71.9% 92.0%
3278041 101.1.1.441 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Zn_ribbon_ISL3 0.71 59.0 5.04e-01 89.9% 58.6%
4938633 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 45.0 3.93e-01 91.0% 48.1%
4950639 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 3.59e-01 89.9% 38.4%
5021698 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.59 51.0 3.56e-01 92.1% 73.6%
3958648 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.57 41.0 4.43e-01 87.6% 89.3%
3440252 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 47.0 3.59e-01 89.9% 79.0%
5081368 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.57 49.0 3.75e-01 92.1% 88.9%
3962900 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.57 39.0 4.35e-01 85.4% 91.4%
3439658 327.10.1.9 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N-like_STI 0.55 44.0 4.71e-01 85.4% 100.0%
5073199 327.18.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.54 43.0 4.42e-01 85.4% 96.5%
5028517 327.18.1.5 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › KH_2 0.54 43.0 4.28e-01 86.5% 98.9%
6238 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 37.0 3.09e-01 73.0% 92.2%
4180037 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 3.94e-01 86.5% 80.8%
3353551 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.51 42.0 3.29e-01 91.0% 79.5%
5061791 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 35.0 3.09e-01 70.8% 100.0%
3700489 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.50 35.0 2.58e-01 73.0% 78.8%