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MK448817.1__QBX21733.1__Javan59_0004__00056

Bact-Vir

MK448817.1__QBX21733.1__Javan59_0004__00056

Identity

Accession:
MK448817 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan59

TaxID: 2548277

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-41
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01610.24 best DDE_Tnp_ISL3 40.3 4.60e-10 88.6% 12.9%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.74 58.0 4.68e-01 100.0% 43.2%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.74 60.0 3.94e-01 100.0% 21.2%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.73 56.0 4.26e-01 94.3% 54.6%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 4.65e-01 100.0% 98.9%
3gwnA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.72 58.0 4.18e-01 100.0% 81.4%
3b0bB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.70 56.0 4.13e-01 100.0% 33.0%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.69 55.0 5.08e-01 94.3% 75.0%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.69 54.0 3.39e-01 100.0% 16.0%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.67 56.0 3.95e-01 97.1% 34.8%
2d7lA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.66 49.0 4.46e-01 91.4% 58.5%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.64 49.0 4.51e-01 100.0% 61.5%
1l8qA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 48.0 4.37e-01 91.4% 67.3%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.60 46.0 4.14e-01 82.9% 62.5%
4r70B03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.59 46.0 3.20e-01 100.0% 22.8%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 4.00e-01 91.4% 58.9%
3tw6A06 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 38.0 3.60e-01 91.4% 59.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953103 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.95 85.0 5.43e-01 100.0% 23.5%
3989057 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.93 83.0 5.51e-01 100.0% 28.0%
3704289 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 57.0 4.31e-01 91.4% 36.3%
3244215 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 51.0 4.25e-01 94.3% 41.7%
4341780 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.72 61.0 5.10e-01 100.0% 53.8%
3087398 541.1.1.2 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dpy-30 0.71 58.0 4.93e-01 100.0% 53.8%
4644218 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.71 61.0 4.62e-01 100.0% 41.2%
5059008 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.70 60.0 4.20e-01 100.0% 30.0%
4208499 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.70 53.0 3.08e-01 100.0% 9.9%
3615878 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.67 58.0 4.28e-01 100.0% 70.5%
4080125 616.1.1.45 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › MIS13 0.66 52.0 4.06e-01 91.4% 42.5%
3602776 605.6.1.12 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › PF27273 0.65 55.0 4.28e-01 100.0% 62.5%
3612596 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.64 50.0 4.57e-01 94.3% 98.0%
3176845 373.1.1.0 ↗ few secondary structure elements › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain 0.62 52.0 5.25e-01 100.0% 97.1%
3572298 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 48.0 2.87e-01 100.0% 26.1%