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MK448820.1__QBX21897.1__Javan617_0002__00051
Bact-VirMK448820.1__QBX21897.1__Javan617_0002__00051
Identity
- Accession:
- MK448820 ↗
- Kingdom:
- phage
Quality
85.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 59-117
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2imzA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.73 | 53.0 | 4.02e-01 | 78.0% | 84.5% |
| 1a21B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 48.0 | 4.08e-01 | 72.9% | 50.0% |
| 3qt2A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 47.0 | 4.05e-01 | 72.9% | 52.6% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 46.0 | 4.25e-01 | 71.2% | 60.8% |
| 3r8qA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 46.0 | 4.09e-01 | 71.2% | 59.6% |
| 3dlqR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 47.0 | 3.99e-01 | 72.9% | 48.0% |
| 1yu0A02 | 2.80.20.10 | Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein | 0.67 | 58.0 | 4.37e-01 | 98.3% | 70.5% |
| 4h8wC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 45.0 | 4.20e-01 | 71.2% | 58.7% |
| 2fr5A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.65 | 55.0 | 4.32e-01 | 100.0% | 82.4% |
| 1t9mA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 44.0 | 3.09e-01 | 72.9% | 31.9% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 44.0 | 3.56e-01 | 72.9% | 58.1% |
| 3vx8A01 | 3.40.140.100 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain | 0.64 | 55.0 | 4.25e-01 | 100.0% | 74.5% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 44.0 | 3.93e-01 | 72.9% | 60.9% |
| 1a21A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 44.0 | 3.76e-01 | 72.9% | 63.3% |
| 7bv5D01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.64 | 53.0 | 4.02e-01 | 100.0% | 68.1% |
| 3l5iA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 43.0 | 3.87e-01 | 72.9% | 59.1% |
| 7y8sB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 43.0 | 3.92e-01 | 72.9% | 64.3% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.63 | 41.0 | 4.12e-01 | 71.2% | 65.6% |
| 5escA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 42.0 | 3.46e-01 | 71.2% | 53.8% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.62 | 46.0 | 4.44e-01 | 79.7% | 71.2% |
| 2dlgA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 42.0 | 3.88e-01 | 72.9% | 62.5% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 41.0 | 3.05e-01 | 71.2% | 46.5% |
| 5l0qB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 41.0 | 3.41e-01 | 72.9% | 63.9% |
| 2je8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 3.48e-01 | 72.9% | 64.7% |
| 3lgdA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.59 | 45.0 | 2.66e-01 | 83.1% | 10.4% |
| 1dyoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 40.0 | 3.03e-01 | 72.9% | 59.0% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.58 | 40.0 | 3.32e-01 | 74.6% | 79.2% |
| 2dl9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 40.0 | 3.56e-01 | 72.9% | 62.9% |
| 4chkB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 39.0 | 3.46e-01 | 76.3% | 47.3% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 39.0 | 3.25e-01 | 72.9% | 58.0% |
| 3pz6D00 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.57 | 45.0 | 3.07e-01 | 93.2% | 31.5% |
| 2rftA02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.56 | 44.0 | 3.08e-01 | 91.5% | 88.3% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 38.0 | 3.72e-01 | 71.2% | 74.2% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.55 | 38.0 | 3.02e-01 | 72.9% | 52.7% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.55 | 45.0 | 3.04e-01 | 100.0% | 90.1% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 37.0 | 2.74e-01 | 74.6% | 35.6% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.53 | 40.0 | 3.44e-01 | 94.9% | 51.1% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.53 | 37.0 | 3.48e-01 | 76.3% | 73.7% |
| 1aw7A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 38.0 | 3.14e-01 | 100.0% | 39.0% |
| 2wngA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.25e-01 | 72.9% | 62.1% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 44.0 | 2.95e-01 | 100.0% | 40.5% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 45.0 | 3.41e-01 | 100.0% | 60.1% |
| 3e4vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 42.0 | 3.17e-01 | 100.0% | 59.2% |
| 3szpB02 | 3.40.190.290 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.51 | 37.0 | 2.73e-01 | 84.7% | 83.4% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5025279 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 51.0 | 4.12e-01 | 72.9% | 62.6% |
| 3929781 | 11.1.1.813 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS4_C | 0.70 | 48.0 | 3.64e-01 | 72.9% | 57.2% |
| 4215906 | 3578.1.1.1 ↗ | beta sandwiches › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE › TagA | 0.69 | 49.0 | 4.03e-01 | 74.6% | 52.4% |
| 4544770 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.67 | 55.0 | 4.36e-01 | 100.0% | 63.6% |
| 3603108 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.66 | 48.0 | 3.71e-01 | 79.7% | 76.6% |
| 3273123 | 3578.1.1.0 ↗ | beta sandwiches › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE | 0.66 | 46.0 | 3.69e-01 | 74.6% | 66.9% |
| 4979631 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.65 | 48.0 | 3.62e-01 | 79.7% | 84.0% |
| 3725727 | 3792.1.1.0 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain | 0.64 | 42.0 | 3.76e-01 | 71.2% | 47.1% |
| 4942915 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.64 | 54.0 | 3.33e-01 | 94.9% | 27.4% |
| 3822637 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 44.0 | 3.72e-01 | 71.2% | 57.9% |
| 4425813 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.64 | 54.0 | 4.39e-01 | 100.0% | 64.2% |
| 3264763 | 11.2.1.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_GDE1 | 0.63 | 43.0 | 3.41e-01 | 72.9% | 40.0% |
| 3621133 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 43.0 | 2.75e-01 | 72.9% | 98.0% |
| 3225456 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.62 | 48.0 | 4.47e-01 | 100.0% | 68.0% |
| 4332271 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.60 | 42.0 | 3.38e-01 | 74.6% | 77.2% |
| 3263394 | 11.1.1.843 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 | 0.59 | 41.0 | 3.30e-01 | 74.6% | 54.6% |
| 3414820 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 40.0 | 3.37e-01 | 71.2% | 52.4% |
| 3258223 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 41.0 | 3.43e-01 | 74.6% | 63.6% |
| 5077562 | 4.1.2.2 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 | 0.59 | 41.0 | 3.83e-01 | 72.9% | 72.0% |
| 4075554 | 3019.1.1.0 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain | 0.58 | 41.0 | 3.29e-01 | 74.6% | 68.3% |
| 3633220 | 4.1.2.2 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 | 0.58 | 40.0 | 3.73e-01 | 72.9% | 66.7% |
| 3253616 | 11.1.1.843 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 | 0.58 | 47.0 | 3.41e-01 | 94.9% | 89.7% |
| 1175478 | 4076.2.1.1 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH | 0.57 | 39.0 | 3.70e-01 | 71.2% | 58.3% |
| 3936178 | 11.1.1.848 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7585 | 0.57 | 50.0 | 3.55e-01 | 100.0% | 84.7% |
| 3028533 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.56 | 45.0 | 3.03e-01 | 96.6% | 68.3% |
| 4976909 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 37.0 | 3.28e-01 | 72.9% | 61.1% |
| 3390207 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 37.0 | 3.24e-01 | 72.9% | 61.1% |
| 3572785 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.54 | 44.0 | 3.47e-01 | 93.2% | 70.8% |
| 3718627 | 3945.1.1.1 ↗ | alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › DHC_N1 | 0.53 | 45.0 | 2.77e-01 | 100.0% | 20.7% |
| 3941506 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.53 | 40.0 | 2.62e-01 | 89.8% | 31.9% |
| 3506574 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.52 | 43.0 | 3.80e-01 | 96.6% | 71.1% |
| 3265108 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 35.0 | 3.06e-01 | 72.9% | 58.0% |
| 3376331 | 10.35.1.2 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV | 0.51 | 35.0 | 2.58e-01 | 71.2% | 81.1% |
| 4034486 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.51 | 37.0 | 2.94e-01 | 100.0% | 33.8% |
| 3920558 | 223.1.1.146 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N, VGCC_alpha2, PF30670 | 0.51 | 40.0 | 2.37e-01 | 93.2% | 97.6% |
| 3587814 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 42.0 | 3.48e-01 | 98.3% | 93.0% |
D2
medium
residues 8-58
Domain cluster:
representative