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MK448828.1__QBX22318.1__Javan69_0022__00022
Bact-VirMK448828.1__QBX22318.1__Javan69_0022__00022
Identity
- Accession:
- MK448828 ↗
- Kingdom:
- phage
Quality
96.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-84
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02661.24 best | Fic | 50.6 | 4.10e-13 | 100.0% | 73.1% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dd7C00 | 1.20.120.1870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain | 0.85 | 76.0 | 5.87e-01 | 100.0% | 47.5% |
| 4u04A02 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.74 | 66.0 | 4.42e-01 | 100.0% | 31.9% |
| 4r60A02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.72 | 55.0 | 3.70e-01 | 100.0% | 21.3% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.71 | 50.0 | 3.75e-01 | 73.3% | 31.9% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.70 | 49.0 | 3.70e-01 | 73.3% | 35.7% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.67 | 57.0 | 4.87e-01 | 100.0% | 65.0% |
| 3h74A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.65 | 44.0 | 2.88e-01 | 76.7% | 15.5% |
| 2qhpA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 45.0 | 2.86e-01 | 73.3% | 66.3% |
| 3shgA00 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.64 | 54.0 | 3.84e-01 | 100.0% | 38.9% |
| 4nk2A01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 52.0 | 4.10e-01 | 100.0% | 76.0% |
| 1l7vA00 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.63 | 54.0 | 3.44e-01 | 100.0% | 50.8% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 55.0 | 4.05e-01 | 100.0% | 73.1% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.60 | 50.0 | 3.11e-01 | 100.0% | 57.4% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.60 | 50.0 | 4.98e-01 | 100.0% | 91.9% |
| 3tixA02 | 6.10.140.1690 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 49.0 | 4.60e-01 | 98.3% | 94.9% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.60 | 52.0 | 4.66e-01 | 100.0% | 74.7% |
| 3he0B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 43.0 | 3.17e-01 | 80.0% | 30.9% |
| 3himA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 51.0 | 3.59e-01 | 98.3% | 87.4% |
| 3a7kB00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 48.0 | 3.24e-01 | 98.3% | 70.9% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.58 | 44.0 | 3.51e-01 | 88.3% | 77.7% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 47.0 | 4.44e-01 | 98.3% | 81.0% |
| 1d1dA02 | 1.10.1200.30 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain | 0.57 | 45.0 | 4.23e-01 | 96.7% | 70.0% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 47.0 | 3.72e-01 | 100.0% | 85.6% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 47.0 | 3.72e-01 | 100.0% | 85.8% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 49.0 | 3.81e-01 | 98.3% | 92.4% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.56 | 47.0 | 3.98e-01 | 100.0% | 88.1% |
| 3qkxB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 43.0 | 3.07e-01 | 83.3% | 32.6% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 46.0 | 3.59e-01 | 100.0% | 78.7% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 47.0 | 3.36e-01 | 96.7% | 86.0% |
| 2w9xA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 45.0 | 3.13e-01 | 91.7% | 73.3% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.54 | 42.0 | 4.04e-01 | 100.0% | 73.1% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.54 | 47.0 | 3.50e-01 | 100.0% | 46.6% |
| 3b3qA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 43.0 | 2.61e-01 | 96.7% | 70.1% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 4.05e-01 | 98.3% | 79.3% |
| 2f07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 45.0 | 3.26e-01 | 100.0% | 69.4% |
| 3smvA02 | 1.10.150.750 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.54 | 43.0 | 4.09e-01 | 100.0% | 75.3% |
| 2xheA04 | 1.25.40.60 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 41.0 | 3.47e-01 | 96.7% | 46.6% |
| 2guzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.53 | 38.0 | 3.67e-01 | 86.7% | 66.2% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 42.0 | 3.40e-01 | 93.3% | 86.2% |
| 1blwC00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 42.0 | 3.27e-01 | 95.0% | 69.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3291594 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.99 | 95.0 | 7.04e-01 | 100.0% | 46.2% |
| 3588861 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.97 | 93.0 | 6.82e-01 | 100.0% | 44.4% |
| 5049550 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.93 | 87.0 | 6.63e-01 | 100.0% | 48.0% |
| 4962046 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.90 | 84.0 | 6.36e-01 | 100.0% | 47.2% |
| 3801665 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.79 | 61.0 | 4.95e-01 | 90.0% | 45.5% |
| 3185758 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.75 | 68.0 | 4.20e-01 | 100.0% | 23.7% |
| 5079924 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.74 | 67.0 | 4.32e-01 | 100.0% | 29.6% |
| 3974750 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.71 | 64.0 | 4.05e-01 | 100.0% | 29.0% |
| 3261133 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.71 | 64.0 | 4.82e-01 | 100.0% | 52.9% |
| 4933807 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 50.0 | 4.46e-01 | 88.3% | 54.1% |
| 3704156 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.63 | 55.0 | 3.93e-01 | 100.0% | 36.2% |
| 3211763 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.62 | 54.0 | 4.09e-01 | 100.0% | 78.0% |
| 3404489 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.60 | 50.0 | 4.23e-01 | 100.0% | 55.5% |
| 3172204 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.59 | 45.0 | 3.64e-01 | 88.3% | 43.8% |
| 3946046 | 101.1.2.52 ↗ | alpha arrays › HTH › HTH › winged helix domain › KicB | 0.58 | 45.0 | 4.32e-01 | 93.3% | 72.0% |
| 4543264 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 45.0 | 3.41e-01 | 93.3% | 32.7% |
| 3332019 | 108.1.1.129 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7874 | 0.57 | 45.0 | 4.06e-01 | 96.7% | 65.3% |
| 3573800 | 193.1.1.6 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CAMSAP_CH | 0.56 | 43.0 | 3.14e-01 | 83.3% | 33.1% |
| 3693662 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.55 | 45.0 | 2.97e-01 | 100.0% | 65.3% |
| 3197091 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.54 | 44.0 | 3.63e-01 | 100.0% | 46.8% |
| 3187412 | 321.1.1.10 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 | 0.54 | 45.0 | 2.84e-01 | 95.0% | 96.5% |
| 3505414 | 109.4.1.85 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop52 | 0.53 | 38.0 | 2.53e-01 | 83.3% | 16.5% |
| 3740460 | 101.1.2.113 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 | 0.52 | 42.0 | 3.24e-01 | 100.0% | 43.4% |
| 3990222 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 40.0 | 2.78e-01 | 85.0% | 35.8% |
| 3176163 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.52 | 41.0 | 3.31e-01 | 98.3% | 39.9% |
| 3619413 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.52 | 37.0 | 2.48e-01 | 80.0% | 17.6% |
| 4990303 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.51 | 43.0 | 3.34e-01 | 98.3% | 94.5% |
| 4423618 | 109.4.1.1139 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HIR3_TPR_N | 0.51 | 43.0 | 3.07e-01 | 96.7% | 33.3% |
| 4060264 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.50 | 42.0 | 3.26e-01 | 100.0% | 94.7% |