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MK448829.1__QBX22371.1__Javan7_0036__00036

Bact-Vir

MK448829.1__QBX22371.1__Javan7_0036__00036

Identity

Accession:
MK448829 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan7

TaxID: 2548303

Cluster

View cluster (247 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-110
PDB
Domain cluster: rep: MT006237.1__QIG78238.1__BIBE0010001c01_00052__00052__D38-115
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.78 53.0 5.97e-01 100.0% 90.5%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 46.0 4.94e-01 100.0% 87.0%
1mc0A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 46.0 3.80e-01 85.0% 67.7%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 51.0 3.43e-01 96.2% 25.3%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 29.0 3.36e-01 93.8% 63.8%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.58 51.0 4.30e-01 100.0% 87.9%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.58 47.0 4.07e-01 88.7% 92.1%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 4.16e-01 95.0% 70.3%
5xgbA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 44.0 3.87e-01 85.0% 89.8%
1ykdB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 43.0 3.35e-01 86.3% 56.0%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.56 39.0 3.71e-01 98.8% 60.2%
3psqB00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.55 44.0 3.48e-01 91.3% 51.1%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 40.0 3.63e-01 78.8% 96.5%
3c8cB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.86e-01 87.5% 83.2%
2braA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 2.71e-01 90.0% 26.4%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.54 41.0 3.53e-01 95.0% 52.0%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.53 41.0 3.41e-01 86.3% 60.5%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 46.0 4.16e-01 100.0% 74.1%
3f8uD03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.91e-01 96.2% 68.9%
1shsA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 4.04e-01 98.8% 87.0%
2gbsA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.51 46.0 3.79e-01 100.0% 59.3%
6pl6B01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 41.0 2.77e-01 91.3% 93.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4981269 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 54.0 5.08e-01 97.5% 70.5%
3795831 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 51.0 5.50e-01 95.0% 97.1%
4426297 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.64 51.0 4.43e-01 98.8% 55.4%
4349207 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 53.0 4.33e-01 100.0% 52.3%
4400928 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.61 50.0 4.41e-01 100.0% 60.0%
3726038 11.1.1.233 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase 0.60 51.0 4.87e-01 96.2% 80.0%
4944949 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 3.97e-01 96.2% 49.7%
3516283 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.58 45.0 4.80e-01 88.7% 97.1%
3340753 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 4.03e-01 73.8% 95.3%
3510772 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.58 51.0 4.01e-01 100.0% 75.4%
5083330 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 45.0 2.69e-01 86.3% 72.8%
4952008 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 43.0 3.51e-01 85.0% 55.2%
3237613 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.21e-01 100.0% 69.2%
3247318 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.12e-01 97.5% 62.3%
3230589 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 50.0 3.63e-01 100.0% 53.2%
3970689 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 43.0 3.78e-01 86.3% 71.2%
3989936 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 42.0 3.88e-01 85.0% 73.6%
4928030 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 43.0 3.80e-01 86.3% 79.2%
3968876 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 43.0 3.98e-01 86.3% 91.4%
3967508 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 44.0 3.86e-01 86.3% 85.2%
4342739 223.1.1.16 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › LuxQ-periplasm 0.54 42.0 2.98e-01 86.3% 35.8%
3832396 375.1.1.134 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Cys_rich_CPXG 0.54 42.0 4.22e-01 85.0% 100.0%
4071803 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 38.0 2.90e-01 73.8% 57.4%
3485203 223.1.1.78 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GPR158_179_EC 0.53 44.0 3.28e-01 93.8% 83.3%
5047600 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 3.49e-01 86.3% 65.9%
3978531 223.1.1.58 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.52 40.0 3.33e-01 86.3% 57.4%
3939955 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.96e-01 97.5% 70.4%
3776029 3338.1.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain 0.51 38.0 3.57e-01 81.2% 97.1%
3687001 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 3.33e-01 85.0% 82.9%
4541933 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.51 40.0 3.29e-01 88.7% 54.4%
3589938 223.1.1.59 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.50 38.0 3.03e-01 82.5% 44.7%
3934401 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.68e-01 96.2% 65.5%