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MK448834.1__QBX22630.1__Javan91_0021__00021
Bact-VirMK448834.1__QBX22630.1__Javan91_0021__00021
Identity
- Accession:
- MK448834 ↗
- Kingdom:
- phage
Quality
77.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-45
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.78 | 59.0 | 4.83e-01 | 84.1% | 49.4% |
| 2hpuA02 | 3.30.70.2050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.74 | 60.0 | 5.38e-01 | 97.7% | 63.5% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.73 | 63.0 | 4.27e-01 | 100.0% | 47.9% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.67 | 57.0 | 5.06e-01 | 100.0% | 94.0% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.66 | 55.0 | 4.83e-01 | 97.7% | 100.0% |
| 7r3eB02 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.65 | 48.0 | 3.34e-01 | 84.1% | 24.5% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.65 | 55.0 | 4.10e-01 | 100.0% | 47.0% |
| 3zoqC00 | 6.20.250.30 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.65 | 53.0 | 5.12e-01 | 100.0% | 86.8% |
| 1cbfA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.63 | 54.0 | 3.95e-01 | 100.0% | 36.4% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.62 | 49.0 | 4.13e-01 | 100.0% | 57.6% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.61 | 51.0 | 3.51e-01 | 100.0% | 37.8% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.61 | 47.0 | 3.98e-01 | 100.0% | 58.5% |
| 1ayeA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.59 | 48.0 | 3.93e-01 | 100.0% | 71.7% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.59 | 43.0 | 3.06e-01 | 84.1% | 24.4% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 47.0 | 3.81e-01 | 95.5% | 99.0% |
| 1vw4U00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.59 | 49.0 | 4.15e-01 | 100.0% | 69.5% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 48.0 | 4.32e-01 | 100.0% | 73.1% |
| 6x3aA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 50.0 | 3.87e-01 | 100.0% | 55.8% |
| 3ecqA02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.58 | 42.0 | 2.62e-01 | 79.5% | 33.3% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 50.0 | 3.47e-01 | 100.0% | 38.8% |
| 1mzkA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.58 | 45.0 | 3.52e-01 | 100.0% | 99.2% |
| 4mamA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.57 | 48.0 | 4.03e-01 | 100.0% | 54.3% |
| 4rudA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.57 | 47.0 | 4.42e-01 | 100.0% | 93.1% |
| 2dgrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 41.0 | 3.74e-01 | 84.1% | 97.0% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 47.0 | 4.06e-01 | 100.0% | 67.1% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 45.0 | 3.56e-01 | 100.0% | 43.6% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 48.0 | 3.71e-01 | 100.0% | 44.0% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.56 | 43.0 | 3.41e-01 | 100.0% | 52.8% |
| 3bzvB00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.56 | 43.0 | 3.79e-01 | 100.0% | 62.5% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.55 | 41.0 | 3.25e-01 | 84.1% | 52.6% |
| 1wgpA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 43.0 | 3.36e-01 | 100.0% | 47.9% |
| 3sonA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 42.0 | 3.16e-01 | 100.0% | 58.9% |
| 3h1qA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 42.0 | 3.36e-01 | 100.0% | 73.9% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 40.0 | 2.53e-01 | 90.9% | 66.0% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.52 | 42.0 | 3.26e-01 | 100.0% | 96.7% |
| 2i0kA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 40.0 | 3.08e-01 | 97.7% | 34.1% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3399490 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.79 | 66.0 | 5.91e-01 | 100.0% | 72.3% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.78 | 67.0 | 5.69e-01 | 100.0% | 66.7% |
| 4399538 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.78 | 68.0 | 5.06e-01 | 100.0% | 95.5% |
| 3623139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.76 | 56.0 | 3.48e-01 | 81.8% | 14.8% |
| 5017 | 4187.1.1.2 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL | 0.75 | 62.0 | 5.45e-01 | 100.0% | 62.1% |
| 4990834 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.71 | 64.0 | 6.16e-01 | 100.0% | 100.0% |
| 4309142 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.69 | 58.0 | 4.52e-01 | 100.0% | 94.3% |
| 4472409 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.67 | 49.0 | 3.38e-01 | 84.1% | 24.7% |
| 3264069 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.67 | 54.0 | 5.06e-01 | 100.0% | 78.3% |
| 3619035 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.65 | 50.0 | 3.90e-01 | 100.0% | 38.9% |
| 3615104 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.64 | 48.0 | 3.82e-01 | 100.0% | 38.9% |
| 4410522 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.64 | 47.0 | 3.27e-01 | 84.1% | 24.2% |
| 3339376 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 52.0 | 4.01e-01 | 100.0% | 42.6% |
| 3631449 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.63 | 51.0 | 3.01e-01 | 100.0% | 12.3% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 51.0 | 4.91e-01 | 100.0% | 98.2% |
| 3813135 | 4.1.1.163 ↗ | beta barrels › SH3 › SH3 › SH3 › BURP | 0.62 | 50.0 | 3.66e-01 | 97.7% | 65.7% |
| 3898106 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 51.0 | 3.75e-01 | 100.0% | 47.7% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.61 | 50.0 | 4.57e-01 | 95.5% | 83.3% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.61 | 49.0 | 4.60e-01 | 100.0% | 94.9% |
| 3658421 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.60 | 49.0 | 4.26e-01 | 97.7% | 100.0% |
| 3312666 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 48.0 | 4.32e-01 | 100.0% | 68.6% |
| 4599941 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.60 | 50.0 | 4.59e-01 | 100.0% | 95.0% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.59 | 47.0 | 4.42e-01 | 100.0% | 93.3% |
| 3941732 | 3115.6.1.0 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon | 0.59 | 48.0 | 4.72e-01 | 100.0% | 88.0% |
| 223776 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.59 | 48.0 | 4.25e-01 | 100.0% | 69.0% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 47.0 | 4.22e-01 | 100.0% | 72.9% |
| 5015713 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 45.0 | 4.31e-01 | 100.0% | 96.7% |
| 3937857 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.58 | 43.0 | 3.57e-01 | 100.0% | 43.5% |
| 4978090 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.58 | 42.0 | 2.73e-01 | 79.5% | 52.1% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.58 | 46.0 | 4.06e-01 | 100.0% | 74.7% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 45.0 | 4.47e-01 | 97.7% | 100.0% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 46.0 | 4.26e-01 | 100.0% | 79.7% |
| 4682714 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.57 | 43.0 | 3.90e-01 | 90.9% | 91.4% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.57 | 45.0 | 4.30e-01 | 100.0% | 96.6% |
| 3649276 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.57 | 44.0 | 3.47e-01 | 100.0% | 84.2% |
| 3222162 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.56 | 46.0 | 3.59e-01 | 100.0% | 52.7% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.56 | 43.0 | 4.35e-01 | 97.7% | 95.6% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.55 | 46.0 | 4.59e-01 | 100.0% | 97.8% |
| 5045852 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.55 | 45.0 | 3.55e-01 | 100.0% | 52.7% |
| 4364088 | 3115.4.1.0 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 | 0.55 | 43.0 | 4.31e-01 | 93.2% | 100.0% |
| 3499524 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.54 | 44.0 | 3.56e-01 | 100.0% | 61.0% |
| 3274736 | 2.2.1.14 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › BP74_N | 0.54 | 40.0 | 3.25e-01 | 97.7% | 99.1% |
| 3968122 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.53 | 43.0 | 4.36e-01 | 100.0% | 97.8% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.53 | 44.0 | 4.38e-01 | 100.0% | 97.8% |
| 3568886 | 2492.1.1.29 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4_like | 0.52 | 43.0 | 2.86e-01 | 100.0% | 37.7% |
| 4927303 | 525.1.1.1 ↗ | a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma | 0.52 | 42.0 | 3.24e-01 | 97.7% | 89.2% |
| 3924581 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 41.0 | 3.47e-01 | 100.0% | 63.3% |
| 3738589 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.51 | 44.0 | 3.38e-01 | 100.0% | 56.2% |
| 3656089 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.51 | 42.0 | 2.57e-01 | 100.0% | 88.7% |
| 4999286 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.51 | 42.0 | 2.83e-01 | 95.5% | 28.3% |