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MK448843.1__QBX23073.1__Javan112_0009__00057
Bact-VirMK448843.1__QBX23073.1__Javan112_0009__00057
Identity
- Accession:
- MK448843 ↗
- Kingdom:
- phage
Quality
75.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 122-195
Domain cluster:
rep: MG711465.1__AUV56645.1__X__00026__D83-135
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ow8C00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.74 | 37.0 | 2.43e-01 | 70.3% | 11.7% |
| 3lkbA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 44.0 | 3.39e-01 | 70.3% | 35.3% |
| 3om0A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 44.0 | 3.42e-01 | 71.6% | 40.6% |
| 1vbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 40.0 | 2.93e-01 | 70.3% | 53.6% |
| 2py5A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 42.0 | 3.22e-01 | 81.1% | 31.0% |
| 4irzA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.59 | 40.0 | 2.49e-01 | 70.3% | 21.7% |
| 4h5iB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 38.0 | 2.51e-01 | 70.3% | 35.4% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.56 | 31.0 | 3.75e-01 | 70.3% | 90.9% |
| 1k8kC00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 41.0 | 2.64e-01 | 79.7% | 25.4% |
| 3i45A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 36.0 | 2.81e-01 | 70.3% | 33.3% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.53 | 37.0 | 3.41e-01 | 75.7% | 87.9% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 2.98e-01 | 74.3% | 80.5% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 37.0 | 3.12e-01 | 77.0% | 66.7% |
| 1hp1A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.50 | 37.0 | 2.47e-01 | 79.7% | 76.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3509348 | 214.1.1.15 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 | 0.70 | 47.0 | 3.13e-01 | 70.3% | 24.7% |
| 3298233 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.69 | 48.0 | 3.72e-01 | 71.6% | 40.0% |
| 5000391 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 48.0 | 3.44e-01 | 75.7% | 93.5% |
| 3308710 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 32.0 | 3.32e-01 | 70.3% | 50.0% |
| 4405978 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.62 | 44.0 | 3.22e-01 | 74.3% | 44.4% |
| 5062548 | 7575.1.1.4 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 | 0.62 | 42.0 | 2.71e-01 | 71.6% | 19.7% |
| 5070318 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.61 | 41.0 | 3.03e-01 | 70.3% | 59.5% |
| 3386772 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.60 | 42.0 | 2.95e-01 | 75.7% | 49.6% |
| 4968790 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.59 | 41.0 | 2.67e-01 | 71.6% | 59.7% |
| 3965396 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.59 | 40.0 | 2.95e-01 | 70.3% | 29.0% |
| 4963881 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.59 | 40.0 | 2.76e-01 | 71.6% | 36.9% |
| 5040467 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.57 | 42.0 | 2.94e-01 | 78.4% | 51.8% |
| 5066221 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.57 | 38.0 | 2.67e-01 | 70.3% | 28.1% |
| 5022885 | 5.1.4.43 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 | 0.56 | 39.0 | 2.35e-01 | 70.3% | 18.7% |
| 4931411 | 244.1.1.16 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GGR_cat | 0.56 | 39.0 | 3.19e-01 | 73.0% | 53.1% |
| 5000431 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.56 | 43.0 | 2.73e-01 | 85.1% | 75.4% |
| 3231587 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 38.0 | 3.54e-01 | 70.3% | 63.3% |
| 4972053 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.55 | 37.0 | 2.45e-01 | 71.6% | 19.5% |
| 3448051 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 39.0 | 2.74e-01 | 73.0% | 37.6% |
| 4943726 | 2004.1.1.195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C | 0.55 | 37.0 | 2.10e-01 | 70.3% | 51.8% |
| 3828945 | 11.1.4.55 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 | 0.55 | 37.0 | 3.10e-01 | 70.3% | 94.5% |
| None | — | 0.54 | 39.0 | 2.60e-01 | 78.4% | 93.2% | |
| 3784764 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.53 | 39.0 | 2.57e-01 | 78.4% | 30.9% |
| 3210163 | 5.1.4.100 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N | 0.53 | 36.0 | 2.30e-01 | 71.6% | 41.8% |
| 4264299 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.53 | 38.0 | 2.32e-01 | 77.0% | 64.4% |
| 3540737 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.53 | 39.0 | 2.82e-01 | 78.4% | 43.7% |
| 3811997 | 5.3.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop | 0.53 | 39.0 | 3.12e-01 | 79.7% | 91.6% |
| 3218497 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.53 | 39.0 | 2.51e-01 | 78.4% | 23.7% |
| 3492330 | 5.1.4.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 | 0.52 | 37.0 | 2.42e-01 | 74.3% | 26.4% |
| 3792083 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 36.0 | 2.41e-01 | 75.7% | 25.6% |