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MK448843.1__QBX23116.1__Javan112_0052__00014

Bact-Vir

MK448843.1__QBX23116.1__Javan112_0052__00014

Identity

Accession:
MK448843 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 147-202
PDB
Pfam (4)
AccessionNameScoreE-valueQ covHMM cov
PF07638.18 best Sigma70_ECF 27.7 3.40e-06 100.0% 27.0%
PF04297.21 UPF0122 34.1 3.70e-08 96.4% 46.5%
PF08281.19 Sigma70_r4_2 45.1 8.70e-12 94.6% 92.6%
PF04545.23 Sigma70_r4 36.8 3.00e-09 89.3% 86.0%
CATH (84)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.96 91.0 8.64e-01 100.0% 89.1%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.96 88.0 8.58e-01 98.2% 90.2%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.95 69.0 6.80e-01 76.8% 72.4%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.95 89.0 6.39e-01 100.0% 40.1%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.95 86.0 7.80e-01 98.2% 75.0%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.94 69.0 6.92e-01 78.6% 76.8%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.93 73.0 7.20e-01 83.9% 79.3%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.93 81.0 6.02e-01 94.6% 41.6%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 87.0 8.39e-01 100.0% 96.7%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 85.0 7.42e-01 100.0% 71.2%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.92 65.0 6.50e-01 75.0% 73.2%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.91 78.0 6.82e-01 96.4% 63.7%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.91 72.0 6.89e-01 89.3% 74.6%
3c57B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 69.0 7.32e-01 82.1% 91.8%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 80.0 6.32e-01 98.2% 50.5%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 83.0 7.42e-01 98.2% 80.0%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 82.0 7.72e-01 100.0% 84.6%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 83.0 7.99e-01 100.0% 93.7%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 71.0 7.29e-01 83.9% 87.0%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 73.0 6.83e-01 87.5% 83.6%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.88 80.0 5.27e-01 98.2% 26.7%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 76.0 7.00e-01 96.4% 74.3%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 81.0 7.88e-01 100.0% 96.7%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 75.0 6.34e-01 96.4% 59.8%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.86 79.0 5.74e-01 100.0% 41.8%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 57.0 6.25e-01 73.2% 86.7%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 75.0 6.73e-01 98.2% 72.4%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.84 74.0 5.50e-01 96.4% 43.5%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.84 61.0 4.59e-01 78.6% 34.1%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 65.0 5.55e-01 83.9% 53.4%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.82 67.0 4.92e-01 91.1% 35.2%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 68.0 5.71e-01 91.1% 56.2%
6sdkA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.81 60.0 4.96e-01 83.9% 45.4%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.81 72.0 6.04e-01 100.0% 61.7%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 58.0 5.88e-01 78.6% 76.8%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.80 64.0 5.39e-01 87.5% 69.1%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 56.0 5.66e-01 73.2% 87.3%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 60.0 5.77e-01 80.4% 71.4%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 67.0 4.96e-01 96.4% 37.6%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 63.0 6.39e-01 89.3% 89.1%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 5.38e-01 80.4% 69.4%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 56.0 5.26e-01 78.6% 62.7%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 52.0 4.94e-01 78.6% 59.1%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 60.0 4.53e-01 83.9% 36.4%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 5.38e-01 80.4% 70.4%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 57.0 6.05e-01 78.6% 90.0%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 57.0 5.54e-01 80.4% 73.0%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 54.0 5.11e-01 75.0% 63.1%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 54.0 4.80e-01 75.0% 53.9%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 50.0 4.86e-01 73.2% 60.3%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 50.0 4.67e-01 73.2% 55.1%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 59.0 6.05e-01 85.7% 90.7%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 51.0 4.79e-01 75.0% 58.8%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 51.0 4.85e-01 80.4% 60.6%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.74 63.0 5.24e-01 92.9% 72.3%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 58.0 4.38e-01 87.5% 46.4%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 4.41e-01 85.7% 38.8%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 60.0 4.34e-01 89.3% 33.3%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 4.21e-01 85.7% 32.5%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.88e-01 82.1% 94.0%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 51.0 5.73e-01 75.0% 100.0%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 62.0 5.88e-01 92.9% 84.8%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 52.0 5.66e-01 75.0% 95.5%
3cecA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 52.0 4.41e-01 80.4% 46.2%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 48.0 4.40e-01 73.2% 50.7%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 57.0 4.88e-01 87.5% 57.0%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 5.01e-01 80.4% 65.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 60.0 4.94e-01 94.6% 68.9%
7vjmB01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 50.0 4.78e-01 80.4% 64.1%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 4.58e-01 87.5% 75.0%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.70 63.0 4.04e-01 100.0% 89.8%
4gqmA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 49.0 3.94e-01 78.6% 39.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.61e-01 89.3% 54.0%
2wusS00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 54.0 4.79e-01 98.2% 59.8%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 45.0 4.39e-01 71.4% 61.5%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.67 58.0 4.36e-01 100.0% 60.4%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 49.0 4.53e-01 83.9% 63.9%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 52.0 4.38e-01 85.7% 80.0%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 48.0 4.18e-01 82.1% 100.0%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 50.0 4.40e-01 91.1% 91.5%
3ni7A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 42.0 3.11e-01 82.1% 65.5%
3cdlA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 42.0 4.34e-01 78.6% 90.7%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.54 48.0 3.83e-01 100.0% 56.2%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 45.0 3.11e-01 100.0% 37.4%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4372550 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.98 94.0 7.72e-01 100.0% 62.2%
3284011 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.98 94.0 8.52e-01 100.0% 81.4%
3288090 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.98 93.0 8.52e-01 100.0% 81.4%
3972713 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.98 93.0 7.54e-01 100.0% 58.9%
3291331 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.98 93.0 8.06e-01 100.0% 70.0%
3967675 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.98 84.0 8.86e-01 89.3% 100.0%
3967026 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.98 93.0 8.25e-01 100.0% 74.7%
4663875 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.98 93.0 5.83e-01 100.0% 23.7%
3967748 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.98 93.0 7.82e-01 100.0% 65.9%
4032673 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.97 92.0 5.77e-01 100.0% 23.3%
3284469 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.97 92.0 8.15e-01 100.0% 76.0%
4233279 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.97 91.0 5.74e-01 100.0% 23.7%
3587755 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.97 91.0 6.67e-01 100.0% 43.8%
3587471 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.96 91.0 6.78e-01 100.0% 45.5%
3972638 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.96 91.0 8.58e-01 100.0% 86.2%
4238054 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.96 91.0 5.70e-01 100.0% 23.3%
3971149 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.96 91.0 7.90e-01 100.0% 70.0%
4237551 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.96 91.0 7.37e-01 100.0% 60.0%
4160122 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.96 91.0 6.37e-01 100.0% 38.0%
3951829 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.96 90.0 7.65e-01 100.0% 67.1%
3281471 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.96 90.0 7.84e-01 100.0% 70.0%
2448404 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.96 84.0 8.22e-01 92.9% 88.3%
None 0.96 90.0 5.65e-01 100.0% 23.3%
4520564 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.96 89.0 7.70e-01 98.2% 68.8%
3971395 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.96 90.0 8.00e-01 100.0% 74.7%
3282225 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.95 90.0 7.79e-01 100.0% 71.2%
3973360 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.95 89.0 8.17e-01 100.0% 80.0%
4456068 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.95 90.0 7.17e-01 100.0% 56.0%
4244028 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.95 80.0 7.76e-01 91.1% 81.7%
4577850 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.95 90.0 7.18e-01 100.0% 57.6%
3961841 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.95 89.0 8.18e-01 100.0% 80.0%
4439853 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.95 89.0 8.16e-01 100.0% 80.0%
3973709 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.95 89.0 7.00e-01 100.0% 53.3%
2817645 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.95 90.0 7.76e-01 100.0% 71.2%
4205790 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.95 89.0 7.71e-01 100.0% 70.0%
3286778 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.95 89.0 8.11e-01 100.0% 80.0%
4396640 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.95 88.0 6.66e-01 100.0% 46.7%
3955987 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.94 88.0 7.19e-01 100.0% 58.9%
4497189 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.94 89.0 8.40e-01 100.0% 86.2%
3163616 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.94 88.0 7.21e-01 100.0% 60.6%
4876274 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.94 87.0 8.34e-01 98.2% 88.7%
3964397 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.94 88.0 6.93e-01 100.0% 54.3%
4303963 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.94 88.0 7.82e-01 100.0% 76.0%
3971665 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.94 87.0 7.81e-01 100.0% 74.7%
3279596 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.94 87.0 5.82e-01 100.0% 29.5%
4165188 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.94 87.0 7.42e-01 100.0% 67.1%
4279016 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.94 88.0 7.62e-01 100.0% 71.2%
4146353 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.93 87.0 7.55e-01 100.0% 71.2%
4289285 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.93 86.0 7.22e-01 100.0% 62.2%
4470607 101.1.1.26 alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.93 87.0 6.60e-01 98.2% 48.7%
3289947 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.93 87.0 7.57e-01 100.0% 70.0%
3959929 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.93 86.0 7.53e-01 100.0% 70.0%
4947436 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.93 79.0 8.06e-01 91.1% 90.9%
3279339 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.93 86.0 5.79e-01 100.0% 30.3%
2464007 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.93 86.0 8.11e-01 100.0% 84.8%
3969325 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.93 86.0 7.91e-01 100.0% 80.0%
4388780 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.93 86.0 6.17e-01 100.0% 39.3%
4304581 101.1.1.26 alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.93 86.0 7.01e-01 98.2% 59.6%
3288971 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.93 86.0 6.11e-01 100.0% 38.0%
3284461 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 86.0 5.40e-01 100.0% 22.8%
None 0.92 85.0 6.60e-01 98.2% 50.9%
4945127 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 80.0 6.75e-01 92.9% 60.0%
3959252 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.92 85.0 8.31e-01 100.0% 93.3%
4243530 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.92 85.0 8.09e-01 100.0% 87.7%
3974736 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 86.0 7.30e-01 100.0% 67.1%
3284051 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.92 85.0 8.03e-01 100.0% 86.2%
4944726 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 78.0 7.58e-01 91.1% 83.3%
4202221 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.92 87.0 8.02e-01 100.0% 82.4%
3969641 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.91 85.0 7.42e-01 100.0% 73.8%
4530655 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.91 85.0 6.83e-01 100.0% 68.0%
2330636 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.91 81.0 8.35e-01 94.6% 100.0%
3284984 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.91 84.0 5.28e-01 100.0% 22.4%
3959868 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 84.0 7.52e-01 100.0% 74.7%
3587538 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.91 83.0 7.72e-01 100.0% 80.9%
None 0.91 83.0 6.45e-01 98.2% 50.9%
4944862 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 81.0 7.03e-01 94.6% 78.8%
None 0.91 83.0 6.55e-01 98.2% 53.3%
3283863 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.90 83.0 6.96e-01 100.0% 63.3%
3283374 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.90 83.0 6.84e-01 100.0% 58.9%
4603338 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.90 84.0 7.68e-01 100.0% 80.0%
None 0.90 82.0 6.50e-01 98.2% 53.3%
3959876 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.90 82.0 6.64e-01 100.0% 56.0%
3961604 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.90 82.0 6.67e-01 100.0% 56.0%
5028064 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 73.0 5.40e-01 85.7% 36.9%
4043241 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.90 82.0 7.18e-01 100.0% 70.0%
4997411 101.1.3.33 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 0.89 80.0 6.93e-01 94.6% 85.0%
4175748 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 82.0 7.16e-01 100.0% 71.2%
3284292 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 81.0 6.85e-01 100.0% 62.2%
4534822 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.89 79.0 7.03e-01 94.6% 84.0%
4486973 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.88 80.0 6.91e-01 100.0% 65.9%
4121566 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.88 79.0 6.67e-01 98.2% 62.2%
4683276 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.88 82.0 6.69e-01 100.0% 62.1%
3589532 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 79.0 6.48e-01 100.0% 58.2%
3573627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 78.0 5.96e-01 100.0% 44.8%
5023952 101.1.2.888 alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4_2 0.86 78.0 7.11e-01 94.6% 78.6%
4336182 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 76.0 6.51e-01 100.0% 63.3%
5064701 101.1.2.879 alpha arrays › HTH › HTH › winged helix domain › DUF134 0.83 78.0 6.81e-01 100.0% 75.0%
4980021 101.1.3.33 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 0.83 78.0 7.11e-01 100.0% 85.7%
4454772 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 73.0 7.02e-01 100.0% 86.2%
1810916 101.1.1.71 alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.81 72.0 6.91e-01 100.0% 89.2%
D2 medium residues 1-68_110-144
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2py5A05 4.10.80.20 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 0.60 21.0 3.36e-01 89.3% 100.0%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.57 23.0 3.39e-01 96.1% 100.0%
2nmbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 34.0 3.11e-01 83.5% 44.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3556744 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.66 25.0 2.99e-01 93.2% 48.0%
3500471 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.57 37.0 3.45e-01 91.3% 52.3%
3988925 3227.1.1.1 alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC 0.57 41.0 2.72e-01 75.7% 35.3%
3225873 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.56 40.0 2.75e-01 74.8% 98.1%
3743393 59.1.4.2 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.55 41.0 2.75e-01 78.6% 21.9%
4160831 109.4.1.1255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.55 39.0 2.36e-01 71.8% 39.3%
3932496 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.54 47.0 3.38e-01 97.1% 78.7%
3211111 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.53 39.0 2.69e-01 77.7% 93.3%
3303720 3336.1.1.1 alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE 0.53 39.0 2.67e-01 76.7% 48.7%
4012111 812.2.1.0 a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain 0.53 22.0 2.80e-01 71.8% 60.3%
2507516 210.1.2.1 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.53 38.0 2.45e-01 75.7% 30.2%
3223233 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 44.0 3.38e-01 93.2% 77.4%
3414363 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.51 44.0 3.02e-01 95.1% 74.9%
3620592 6155.1.1.15 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 0.50 46.0 4.11e-01 100.0% 80.0%