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MK448843.1__QBX23118.1__Javan112_0054__00012
Bact-VirMK448843.1__QBX23118.1__Javan112_0054__00012
Identity
- Accession:
- MK448843 ↗
- Kingdom:
- phage
Quality
81.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 70-214
Domain cluster:
rep: LR595870.1__VUD38004.1__X__00044__D2-145
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.65 | 44.0 | 5.06e-01 | 99.3% | 98.0% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.65 | 46.0 | 5.25e-01 | 99.3% | 97.2% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.64 | 36.0 | 4.08e-01 | 72.4% | 72.1% |
| 6vbkA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.61 | 44.0 | 4.94e-01 | 99.3% | 96.4% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.61 | 38.0 | 4.06e-01 | 73.1% | 72.1% |
| 1zboA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.61 | 44.0 | 4.91e-01 | 100.0% | 96.5% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.60 | 34.0 | 3.82e-01 | 72.4% | 69.2% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.59 | 42.0 | 4.47e-01 | 99.3% | 84.0% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 36.0 | 4.09e-01 | 85.5% | 86.2% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.56 | 35.0 | 4.25e-01 | 70.3% | 95.8% |
| 2x8kA01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 36.0 | 4.09e-01 | 72.4% | 89.5% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 32.0 | 3.97e-01 | 92.4% | 100.0% |
| 1xqbA01 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.54 | 37.0 | 4.21e-01 | 97.2% | 93.6% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 38.0 | 3.76e-01 | 73.1% | 76.9% |
| 4z85A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 37.0 | 3.37e-01 | 72.4% | 61.9% |
| 2ecuA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 38.0 | 3.79e-01 | 73.1% | 74.5% |
| 2d37A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 37.0 | 3.67e-01 | 72.4% | 74.8% |
| 2ewhA01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.52 | 25.0 | 3.17e-01 | 83.4% | 75.3% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 37.0 | 3.71e-01 | 73.8% | 76.3% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 29.0 | 3.60e-01 | 88.3% | 97.6% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.51 | 24.0 | 3.08e-01 | 84.8% | 78.2% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3385960 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.67 | 47.0 | 3.90e-01 | 99.3% | 42.0% |
| 4245054 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.67 | 48.0 | 3.97e-01 | 99.3% | 43.8% |
| 4576982 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.67 | 48.0 | 4.00e-01 | 99.3% | 44.7% |
| 2755063 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.66 | 47.0 | 4.10e-01 | 99.3% | 49.5% |
| 4276781 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.66 | 47.0 | 4.07e-01 | 99.3% | 48.2% |
| 4131458 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.66 | 47.0 | 3.97e-01 | 99.3% | 45.1% |
| 4481366 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.66 | 47.0 | 3.97e-01 | 99.3% | 45.1% |
| 4081025 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.66 | 47.0 | 3.82e-01 | 99.3% | 40.0% |
| 1871771 | 1.1.5.43 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like | 0.66 | 37.0 | 4.22e-01 | 74.5% | 72.1% |
| 3970015 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.66 | 35.0 | 4.25e-01 | 71.0% | 78.7% |
| 4671888 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.66 | 47.0 | 3.91e-01 | 99.3% | 42.8% |
| 4648999 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.66 | 47.0 | 4.04e-01 | 99.3% | 48.2% |
| 4531216 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.66 | 47.0 | 3.91e-01 | 99.3% | 44.2% |
| 4469190 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 47.0 | 3.90e-01 | 100.0% | 42.8% |
| 4665306 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 47.0 | 3.82e-01 | 99.3% | 41.6% |
| 4566229 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.65 | 47.0 | 3.20e-01 | 100.0% | 21.6% |
| 4615227 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 47.0 | 3.96e-01 | 99.3% | 45.0% |
| 4458331 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 47.0 | 3.95e-01 | 99.3% | 45.5% |
| 4509138 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 47.0 | 4.04e-01 | 100.0% | 48.6% |
| None | — | 0.65 | 47.0 | 3.19e-01 | 100.0% | 21.8% | |
| 4430275 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 47.0 | 4.04e-01 | 99.3% | 49.3% |
| 4098347 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 47.0 | 3.21e-01 | 99.3% | 22.1% |
| 4652891 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 48.0 | 4.04e-01 | 99.3% | 45.7% |
| 188 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 46.0 | 5.23e-01 | 99.3% | 96.4% |
| 4382946 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 46.0 | 4.03e-01 | 99.3% | 49.3% |
| 4057741 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 44.0 | 3.78e-01 | 99.3% | 44.0% |
| 4279308 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 47.0 | 4.05e-01 | 100.0% | 49.8% |
| 3758110 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 44.0 | 3.70e-01 | 99.3% | 42.1% |
| 4637249 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 47.0 | 4.02e-01 | 99.3% | 49.1% |
| 4349227 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 47.0 | 3.90e-01 | 99.3% | 44.5% |
| 4190222 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 47.0 | 3.93e-01 | 100.0% | 45.4% |
| 4586641 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 46.0 | 3.88e-01 | 100.0% | 44.6% |
| 4169706 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 46.0 | 3.87e-01 | 100.0% | 44.8% |
| 4109614 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 46.0 | 4.04e-01 | 100.0% | 51.0% |
| 4588052 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 46.0 | 3.79e-01 | 99.3% | 42.8% |
| 4214302 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 47.0 | 4.08e-01 | 99.3% | 50.5% |
| 4886283 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 46.0 | 3.89e-01 | 99.3% | 46.0% |
| 3658804 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 43.0 | 4.75e-01 | 99.3% | 86.1% |
| 4358643 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.63 | 46.0 | 4.01e-01 | 100.0% | 50.0% |
| 4154078 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.63 | 46.0 | 4.03e-01 | 99.3% | 51.2% |
| 3820214 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.62 | 42.0 | 3.72e-01 | 99.3% | 46.0% |
| 3971942 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.62 | 44.0 | 4.02e-01 | 100.0% | 54.4% |
| 4313132 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.62 | 46.0 | 3.83e-01 | 99.3% | 44.3% |
| 3965594 | 1.1.13.53 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 | 0.62 | 34.0 | 4.20e-01 | 70.3% | 83.2% |
| 4316025 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.62 | 46.0 | 3.97e-01 | 99.3% | 50.5% |
| 3732638 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.62 | 44.0 | 3.62e-01 | 99.3% | 41.2% |
| 4469533 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.61 | 46.0 | 3.78e-01 | 99.3% | 43.8% |
| 3743285 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.60 | 46.0 | 3.91e-01 | 99.3% | 50.0% |
| 3650734 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.60 | 44.0 | 4.45e-01 | 99.3% | 75.2% |
| 4257535 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.59 | 33.0 | 3.67e-01 | 71.7% | 67.0% |
| 3347068 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.59 | 42.0 | 3.70e-01 | 99.3% | 49.5% |
| 3267872 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 38.0 | 4.01e-01 | 93.8% | 71.5% |
| 3653954 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.59 | 43.0 | 3.68e-01 | 99.3% | 45.8% |
| 4864011 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.57 | 37.0 | 4.29e-01 | 94.5% | 91.4% |
| 3859218 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.57 | 39.0 | 4.22e-01 | 91.7% | 84.2% |
| 5056905 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.57 | 35.0 | 4.30e-01 | 94.5% | 98.9% |
| 5037173 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 34.0 | 4.13e-01 | 95.2% | 92.6% |
| 5012011 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 40.0 | 4.26e-01 | 97.9% | 85.6% |
| 3980899 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.54 | 36.0 | 4.08e-01 | 70.3% | 89.1% |
| 3286458 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 41.0 | 4.45e-01 | 94.5% | 94.4% |
| 4995815 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.54 | 38.0 | 4.04e-01 | 73.1% | 83.2% |
| 4983682 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.52 | 37.0 | 3.82e-01 | 73.1% | 83.6% |
| 4936008 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.52 | 34.0 | 4.03e-01 | 95.9% | 98.9% |
| 3501754 | 1.1.13.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N | 0.52 | 36.0 | 4.17e-01 | 98.6% | 97.1% |
| 5075917 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.52 | 36.0 | 3.65e-01 | 72.4% | 78.7% |
| 3601377 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 35.0 | 3.79e-01 | 91.7% | 82.5% |
| 3517676 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 37.0 | 4.07e-01 | 95.9% | 91.7% |
| 3324420 | 11.1.1.122 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set | 0.50 | 33.0 | 3.74e-01 | 91.7% | 87.3% |
D2
medium
residues 1-67