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MK448843.1__QBX23122.1__Javan112_0058__00008
Bact-VirMK448843.1__QBX23122.1__Javan112_0058__00008
Identity
- Accession:
- MK448843 ↗
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-66
Domain cluster:
rep: IMGVR_UViG_2547132059_000002-2547132059-2547235249__D6-65
D2
medium
residues 67-181
Domain cluster:
rep: IMGVR_UViG_3300025859_001166-3300025859-Ga0209096_100026138__D12-148
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.71 | 58.0 | 4.54e-01 | 87.8% | 67.6% |
| 4esjA01 | 3.40.210.30 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain | 0.68 | 59.0 | 5.32e-01 | 93.9% | 72.4% |
| 1rznA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 60.0 | 5.48e-01 | 97.4% | 84.7% |
| 1b96A00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.67 | 55.0 | 4.31e-01 | 88.7% | 61.1% |
| 2w8mA00 | 3.40.1350.50 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif | 0.65 | 60.0 | 5.27e-01 | 99.1% | 75.2% |
| 4oc8A01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.57 | 51.0 | 4.18e-01 | 100.0% | 74.4% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.55 | 40.0 | 3.38e-01 | 93.9% | 45.5% |
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.55 | 41.0 | 3.44e-01 | 78.3% | 54.4% |
| 3eyxA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.55 | 38.0 | 3.21e-01 | 70.4% | 87.8% |
| 1i6pA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.54 | 43.0 | 3.57e-01 | 87.0% | 82.7% |
| 1rxxC01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.54 | 48.0 | 3.51e-01 | 100.0% | 98.5% |
| 1s9rA01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.54 | 47.0 | 3.50e-01 | 100.0% | 74.0% |
| 1i74A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.54 | 45.0 | 4.48e-01 | 91.3% | 95.0% |
| 4lg3A01 | 3.10.310.90 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.53 | 39.0 | 3.76e-01 | 77.4% | 91.8% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.53 | 41.0 | 3.52e-01 | 83.5% | 69.7% |
| 3abgB01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 38.0 | 3.45e-01 | 76.5% | 72.8% |
| 4da2A02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 42.0 | 3.88e-01 | 87.0% | 82.9% |
| 6p66D01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.51 | 37.0 | 3.82e-01 | 96.5% | 79.8% |
| 2yjgA02 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.51 | 41.0 | 3.26e-01 | 86.1% | 71.2% |
| 1u7zC00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.50 | 45.0 | 3.65e-01 | 98.3% | 94.1% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4967615 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.73 | 65.0 | 5.56e-01 | 96.5% | 77.7% |
| 4260673 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.71 | 64.0 | 6.00e-01 | 99.1% | 79.9% |
| 4971943 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.71 | 46.0 | 5.06e-01 | 79.1% | 81.1% |
| 1503110 | 2008.1.1.21 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnI | 0.70 | 62.0 | 5.36e-01 | 95.7% | 70.9% |
| 4977491 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.68 | 61.0 | 5.96e-01 | 98.3% | 88.8% |
| 3721927 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 54.0 | 4.65e-01 | 86.1% | 85.0% |
| 1837447 | 2008.1.1.56 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_5 | 0.67 | 58.0 | 5.48e-01 | 100.0% | 78.3% |
| 4965173 | 2008.1.1.231 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF25902 | 0.67 | 60.0 | 5.27e-01 | 94.8% | 68.1% |
| 3837944 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 53.0 | 5.36e-01 | 86.1% | 100.0% |
| 3515746 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.65 | 45.0 | 4.06e-01 | 71.3% | 61.9% |
| 3838809 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 53.0 | 4.52e-01 | 88.7% | 63.8% |
| 4362615 | 2008.1.1.141 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 | 0.63 | 45.0 | 4.53e-01 | 98.3% | 73.9% |
| 3661085 | 294.1.1.0 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors | 0.61 | 34.0 | 4.07e-01 | 86.1% | 83.6% |
| 4031223 | 2008.1.1.204 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2800 | 0.59 | 43.0 | 3.36e-01 | 76.5% | 46.0% |
| 5012280 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.56 | 42.0 | 3.43e-01 | 77.4% | 56.6% |
| 5000157 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.55 | 41.0 | 3.45e-01 | 78.3% | 51.0% |
| 4955488 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 40.0 | 4.15e-01 | 78.3% | 86.4% |
| 3253883 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.54 | 49.0 | 4.35e-01 | 100.0% | 94.5% |
| 113919 | 4126.1.1.1 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA | 0.54 | 38.0 | 3.00e-01 | 72.2% | 70.2% |
| 5046632 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.53 | 44.0 | 3.01e-01 | 87.8% | 86.8% |
| 5068401 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.53 | 48.0 | 4.61e-01 | 100.0% | 90.4% |
| 4457853 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.53 | 30.0 | 3.66e-01 | 75.7% | 86.7% |
| 3271282 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.52 | 42.0 | 3.76e-01 | 86.1% | 89.4% |
| 4630823 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.52 | 43.0 | 4.37e-01 | 92.2% | 96.5% |
| 5078940 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 45.0 | 4.14e-01 | 99.1% | 78.7% |
| 4351693 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.51 | 43.0 | 4.37e-01 | 93.0% | 97.4% |
| 4946707 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.50 | 40.0 | 4.01e-01 | 96.5% | 84.3% |