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MK448843.1__QBX23126.1__Javan112_0062__00004

Bact-Vir

MK448843.1__QBX23126.1__Javan112_0062__00004

Identity

Accession:
MK448843 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan112

TaxID: 2547982

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-53
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mvfD00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.80 56.0 5.82e-01 79.2% 81.8%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.75 44.0 2.72e-01 100.0% 11.1%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.74 44.0 2.56e-01 100.0% 6.8%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 43.0 2.85e-01 100.0% 14.8%
3clqA02 3.90.1710.10 Alpha Beta › Alpha-Beta Complex › Enterococcus faecalis V583 fold › Enterococcus faecalis V583 domain 0.72 47.0 3.31e-01 100.0% 20.9%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.71 49.0 4.82e-01 77.1% 67.9%
2cnqA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 54.0 4.01e-01 100.0% 83.9%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.64 39.0 4.09e-01 100.0% 67.4%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 39.0 2.53e-01 100.0% 12.8%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 39.0 3.45e-01 100.0% 41.9%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 52.0 3.95e-01 97.9% 64.3%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 49.0 3.62e-01 97.9% 53.1%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 38.0 2.81e-01 100.0% 22.1%
2kjxA01 3.30.720.220 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 45.0 4.44e-01 100.0% 77.4%
3cgiA00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.59 50.0 3.88e-01 100.0% 58.9%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.59 38.0 3.98e-01 70.8% 73.3%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 36.0 2.54e-01 100.0% 17.6%
5fbhA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 39.0 2.66e-01 100.0% 18.2%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.57 39.0 2.97e-01 100.0% 27.2%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.97e-01 100.0% 55.4%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.56 45.0 4.14e-01 100.0% 83.1%
3d4iB01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 44.0 2.94e-01 100.0% 100.0%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 43.0 3.35e-01 100.0% 60.8%
1a90A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.49e-01 100.0% 50.0%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.85e-01 95.8% 95.5%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.53 42.0 4.02e-01 100.0% 100.0%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 34.0 3.50e-01 100.0% 70.5%
3njfA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 46.0 3.53e-01 100.0% 50.9%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.52 37.0 2.99e-01 95.8% 37.9%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 4.22e-01 100.0% 95.5%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 42.0 3.39e-01 100.0% 61.6%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.52 41.0 3.53e-01 95.8% 87.2%
3nqpA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 40.0 2.40e-01 100.0% 60.7%
4edjA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 41.0 3.34e-01 93.8% 56.1%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.51 44.0 3.51e-01 100.0% 82.0%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 42.0 3.78e-01 97.9% 95.7%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 44.0 3.38e-01 100.0% 54.6%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032176 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.81 60.0 5.53e-01 79.2% 65.0%
5032935 304.8.1.112 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MazE_antitoxin 0.80 57.0 4.05e-01 77.1% 26.7%
5080671 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.79 57.0 5.04e-01 79.2% 52.9%
1948837 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.77 55.0 5.56e-01 79.2% 77.1%
3639522 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.77 48.0 2.90e-01 100.0% 10.5%
5031988 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.75 53.0 5.27e-01 77.1% 72.0%
4992635 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.75 54.0 5.46e-01 79.2% 79.6%
5062781 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.74 55.0 5.64e-01 79.2% 86.7%
4962054 375.1.1.345 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7837 0.72 44.0 4.55e-01 100.0% 64.4%
4930854 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.72 50.0 5.37e-01 75.0% 90.0%
4962276 4.26.1.10 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › DUF7837 0.70 43.0 4.40e-01 100.0% 64.4%
3211026 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 42.0 3.40e-01 100.0% 31.6%
5030452 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 42.0 4.30e-01 100.0% 64.4%
3888547 395.1.1.3 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › JTB 0.67 51.0 4.83e-01 100.0% 68.3%
3236763 395.1.1.3 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › JTB 0.66 53.0 4.96e-01 100.0% 71.7%
4941368 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.66 45.0 4.76e-01 77.1% 100.0%
4946895 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.65 44.0 4.41e-01 75.0% 70.0%
3783703 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.64 49.0 2.95e-01 83.3% 30.1%
5072549 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.63 39.0 2.33e-01 100.0% 8.1%
5072662 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.63 54.0 3.99e-01 100.0% 63.7%
4977171 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.62 45.0 4.37e-01 79.2% 72.2%
5038934 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.62 39.0 3.78e-01 100.0% 53.4%
4408393 2003.1.5.174 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15 0.61 49.0 3.00e-01 97.9% 20.6%
4154901 2003.1.5.156 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 0.60 49.0 3.02e-01 100.0% 21.4%
3253426 2.1.1.28 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.60 48.0 3.77e-01 100.0% 59.2%
4945800 3781.1.1.2 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11 0.59 48.0 4.49e-01 100.0% 100.0%
3553625 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 35.0 3.40e-01 100.0% 52.7%
3634384 4292.2.1.2 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.58 48.0 3.66e-01 100.0% 43.1%
3736784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 3.58e-01 100.0% 52.5%
3978598 207.2.1.38 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › PATR,AC_1 0.56 39.0 2.55e-01 77.1% 37.0%
3473280 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 3.53e-01 100.0% 43.0%
5077014 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.55 40.0 3.07e-01 81.2% 35.8%
3929651 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.55 44.0 3.51e-01 100.0% 49.6%
4946882 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 32.0 3.14e-01 100.0% 49.1%
5062944 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 4.27e-01 100.0% 90.9%
4321479 2.1.1.84 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.54 46.0 3.32e-01 100.0% 55.9%
5012493 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.54 36.0 3.67e-01 70.8% 73.3%
5045333 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 36.0 3.41e-01 77.1% 56.5%
3923043 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.52 46.0 3.65e-01 100.0% 84.0%
4278171 375.1.1.41 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Methyltransf_13 0.51 42.0 3.92e-01 100.0% 75.0%
3514218 206.1.3.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.51 41.0 2.77e-01 100.0% 21.8%
3235657 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.51 39.0 4.04e-01 100.0% 95.6%
4962895 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 37.0 3.58e-01 93.8% 70.9%
4055478 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.50 39.0 3.28e-01 93.8% 57.9%
3704152 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.50 41.0 3.40e-01 100.0% 51.2%