←Back to structures

MK448844.1__QBX23137.1__Javan116_0008__00008

Bact-Vir

MK448844.1__QBX23137.1__Javan116_0008__00008

Identity

Accession:
MK448844 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan116

TaxID: 2547985

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-51
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7craA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 63.0 5.04e-01 97.8% 47.8%
4dwnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.69 59.0 4.68e-01 100.0% 52.6%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 52.0 4.66e-01 84.8% 59.7%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 41.0 3.99e-01 91.3% 55.8%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.62 50.0 4.42e-01 100.0% 94.8%
4ex6A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 46.0 4.24e-01 87.0% 59.7%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 49.0 4.41e-01 93.5% 62.3%
1wj7A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 48.0 4.49e-01 95.7% 70.0%
1xgsA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 3.90e-01 87.0% 77.9%
3bg3A04 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 43.0 4.35e-01 100.0% 89.4%
2p0wA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 46.0 4.36e-01 87.0% 79.6%
4wp2A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 46.0 4.33e-01 97.8% 73.8%
1uejB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 2.96e-01 100.0% 94.2%
3oz6B02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 46.0 3.00e-01 97.8% 48.9%
3e21A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 41.0 4.27e-01 95.7% 100.0%
7n1nB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 39.0 3.76e-01 91.3% 88.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032135 632.2.1.39 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF4355 0.75 64.0 5.40e-01 100.0% 57.5%
3299932 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 64.0 6.23e-01 100.0% 100.0%
3203006 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.68 60.0 5.00e-01 100.0% 61.3%
5024733 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.68 41.0 3.66e-01 91.3% 44.6%
3164594 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 51.0 5.13e-01 89.1% 91.1%
4979452 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 40.0 3.49e-01 91.3% 41.4%
4009443 101.26.1.0 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain 0.65 51.0 5.13e-01 91.3% 93.3%
5030270 3831.1.1.0 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 0.65 51.0 4.03e-01 97.8% 80.0%
3930564 109.4.1.89 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_FH3,Drf_GBD 0.60 52.0 3.08e-01 97.8% 11.9%
5073992 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.59 47.0 4.15e-01 89.1% 90.0%
4945903 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.97e-01 84.8% 65.5%
3480663 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.56 43.0 3.85e-01 97.8% 87.5%
3946983 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.55 42.0 3.80e-01 97.8% 98.8%
5012421 101.1.2.889 ↗ alpha arrays › HTH › HTH › winged helix domain › Arc_trans_TRASH 0.55 42.0 3.35e-01 89.1% 70.5%
4977346 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.91e-01 84.8% 72.0%
3279510 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.54 39.0 3.71e-01 84.8% 98.3%
4958809 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.51 45.0 3.68e-01 100.0% 87.1%