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MK448864.1__QBX24250.1__Javan180_0017__00021

Bact-Vir

MK448864.1__QBX24250.1__Javan180_0017__00021

Identity

Accession:
MK448864 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan180

TaxID: 2548028

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-61
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hyfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 3.46e-01 75.0% 87.7%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 3.21e-01 94.2% 57.3%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.86e-01 88.5% 66.7%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 3.01e-01 71.2% 85.6%
3pp9B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.15e-01 100.0% 95.4%
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 46.0 3.33e-01 100.0% 66.0%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 38.0 2.86e-01 98.1% 26.1%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 39.0 3.03e-01 90.4% 63.8%
5mqcC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 34.0 2.36e-01 78.8% 51.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.87 75.0 5.17e-01 94.2% 29.9%
3967003 1.1.13.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_11 0.84 58.0 4.20e-01 73.1% 27.1%
2595159 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.82 69.0 4.82e-01 94.2% 31.3%
3505678 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 52.0 3.62e-01 94.2% 25.4%
3424575 220.1.1.153 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.62 45.0 3.68e-01 78.8% 48.0%
3635381 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 50.0 3.32e-01 100.0% 80.0%
3592924 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.58 44.0 2.71e-01 88.5% 36.6%
3598133 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.57 40.0 2.53e-01 75.0% 35.7%
3705436 2005.1.1.54 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Diphthami_syn_2, PF28410 0.57 39.0 2.54e-01 75.0% 37.5%
3914253 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.56 42.0 2.80e-01 88.5% 45.9%
3818551 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 42.0 2.80e-01 88.5% 46.4%
1943 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.54 42.0 2.63e-01 86.5% 44.4%
2997715 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.53 41.0 2.61e-01 86.5% 43.0%
3731333 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.53 41.0 3.13e-01 90.4% 92.9%