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MK448874.1__QBX24743.1__Javan206_0008__00008

Bact-Vir

MK448874.1__QBX24743.1__Javan206_0008__00008

Identity

Accession:
MK448874 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan206

TaxID: 2548046

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-85
PDB
Domain cluster: rep: MK448727.1__QBX16890.1__Javan291_0014__00014__D161-249
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07261.17 best DnaB_2 85.0 3.50e-24 89.2% 94.6%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zc2A00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.94 82.0 8.60e-01 90.4% 100.0%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.90 72.0 7.52e-01 84.3% 100.0%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.70 42.0 4.87e-01 85.5% 83.3%
2daiA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 41.0 4.14e-01 81.9% 59.0%
1qzeA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 34.0 4.54e-01 73.5% 100.0%
1ufzA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 42.0 4.90e-01 74.7% 93.1%
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 41.0 4.79e-01 74.7% 100.0%
7swlB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 49.0 4.58e-01 88.0% 97.1%
1w5sA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 47.0 4.63e-01 88.0% 81.8%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.56 40.0 4.41e-01 90.4% 100.0%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 39.0 3.03e-01 79.5% 36.0%
1bdp002 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.52 30.0 2.81e-01 81.9% 43.1%
6vddA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.51 30.0 2.72e-01 81.9% 40.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587918 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.91 87.0 8.28e-01 100.0% 88.4%
4498620 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.90 73.0 7.90e-01 89.2% 100.0%
4048400 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.90 83.0 8.24e-01 98.8% 94.1%
3114 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.89 69.0 7.35e-01 80.7% 100.0%
3989035 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.88 82.0 7.82e-01 100.0% 88.4%
4042821 4230.1.1.0 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain 0.75 66.0 6.09e-01 97.6% 77.1%
3588170 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.72 63.0 6.06e-01 98.8% 88.4%
3249392 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 48.0 5.33e-01 71.1% 93.8%
3588141 1184.1.1.0 ↗ 0.70 51.0 4.63e-01 78.3% 59.1%
3373127 148.1.3.205 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 0.70 53.0 5.22e-01 81.9% 75.6%
1175633 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 51.0 5.25e-01 91.6% 83.5%
3887909 148.1.3.5 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.67 51.0 5.32e-01 83.1% 96.0%
3254417 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 54.0 5.62e-01 90.4% 98.7%
5025109 610.3.1.0 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.66 53.0 4.29e-01 94.0% 45.6%
4121495 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 46.0 4.83e-01 83.1% 88.0%
3278722 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 47.0 4.81e-01 95.2% 88.7%
3239257 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.60 42.0 4.75e-01 72.3% 100.0%
4038683 103.1.1.5 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › FmrO 0.59 39.0 4.34e-01 77.1% 95.0%
4019007 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 45.0 4.54e-01 94.0% 84.7%
4006612 639.2.1.1 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.58 45.0 4.52e-01 84.3% 82.4%
3459081 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 45.0 4.76e-01 88.0% 94.7%
4018467 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 46.0 4.08e-01 95.2% 67.7%
D2 medium residues 94-125
PDB