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MK448876.1__QBX24857.1__Javan214_0020__00020
Bact-VirMK448876.1__QBX24857.1__Javan214_0020__00020
Identity
- Accession:
- MK448876 ↗
- Kingdom:
- phage
Quality
71.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-43
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tqtA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.74 | 59.0 | 5.12e-01 | 100.0% | 63.2% |
| 3nuhB02 | 3.30.300.370 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.70 | 55.0 | 4.09e-01 | 100.0% | 93.4% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.67 | 55.0 | 4.67e-01 | 100.0% | 87.3% |
| 2dt8A01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 52.0 | 3.59e-01 | 92.1% | 55.7% |
| 4ggmX02 | 3.40.140.80 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain | 0.67 | 53.0 | 3.69e-01 | 100.0% | 31.3% |
| 3fysA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 53.0 | 3.68e-01 | 100.0% | 24.8% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.66 | 53.0 | 5.38e-01 | 100.0% | 100.0% |
| 8onjA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.63 | 48.0 | 3.55e-01 | 84.2% | 80.4% |
| 2j82A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.63 | 48.0 | 3.15e-01 | 100.0% | 30.8% |
| 6cngA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.63 | 49.0 | 4.92e-01 | 100.0% | 100.0% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.62 | 50.0 | 4.47e-01 | 100.0% | 62.3% |
| 1pzxA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.62 | 46.0 | 4.69e-01 | 94.7% | 100.0% |
| 3fdjA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.61 | 50.0 | 5.05e-01 | 100.0% | 100.0% |
| 1x4rA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.60 | 47.0 | 3.94e-01 | 100.0% | 79.7% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.60 | 45.0 | 3.81e-01 | 100.0% | 51.7% |
| 3n6xA03 | 3.30.1490.270 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.57 | 44.0 | 4.10e-01 | 97.4% | 69.6% |
| 2qh7B01 | 3.40.5.90 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › CDGSH iron-sulfur domain, mitoNEET-type | 0.57 | 42.0 | 4.11e-01 | 100.0% | 74.5% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.56 | 41.0 | 4.05e-01 | 100.0% | 90.0% |
| 2rikA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 3.51e-01 | 100.0% | 50.0% |
| 5uv6A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.49e-01 | 100.0% | 52.8% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 41.0 | 2.98e-01 | 100.0% | 52.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4100838 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.84 | 68.0 | 4.16e-01 | 100.0% | 15.6% |
| 3964707 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.78 | 65.0 | 4.03e-01 | 100.0% | 17.4% |
| 4331897 | 235.1.1.41 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › TraH_2 | 0.74 | 61.0 | 4.12e-01 | 97.4% | 28.0% |
| 4958377 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.64 | 51.0 | 4.90e-01 | 100.0% | 77.1% |
| 4488855 | 275.1.1.5 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC | 0.64 | 49.0 | 4.08e-01 | 100.0% | 96.5% |
| 4927165 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.63 | 46.0 | 4.35e-01 | 100.0% | 63.6% |
| 3962632 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.61 | 42.0 | 2.94e-01 | 73.7% | 42.9% |
| 4988126 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.55 | 43.0 | 3.23e-01 | 100.0% | 71.7% |
| 3912708 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.54 | 45.0 | 3.65e-01 | 92.1% | 95.7% |