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MK448877.1__QBX24929.1__Javan220_0025__00025
Bact-VirMK448877.1__QBX24929.1__Javan220_0025__00025
Identity
- Accession:
- MK448877 ↗
- Kingdom:
- phage
Quality
80.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-47
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.89 | 73.0 | 6.54e-01 | 88.9% | 72.1% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.88 | 77.0 | 5.39e-01 | 100.0% | 33.6% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.86 | 76.0 | 6.78e-01 | 100.0% | 76.6% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.86 | 73.0 | 7.16e-01 | 93.3% | 100.0% |
| 3qf7A02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.86 | 80.0 | 6.99e-01 | 100.0% | 81.0% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.85 | 70.0 | 6.32e-01 | 91.1% | 73.8% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.85 | 76.0 | 6.75e-01 | 100.0% | 79.4% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.85 | 76.0 | 6.79e-01 | 100.0% | 77.4% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.84 | 75.0 | 5.63e-01 | 100.0% | 42.5% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 74.0 | 6.72e-01 | 100.0% | 98.3% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 74.0 | 6.12e-01 | 100.0% | 61.3% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 68.0 | 5.15e-01 | 91.1% | 42.2% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.82 | 68.0 | 4.77e-01 | 93.3% | 54.3% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 72.0 | 6.04e-01 | 100.0% | 59.2% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.81 | 71.0 | 6.42e-01 | 100.0% | 96.7% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.79 | 65.0 | 5.87e-01 | 95.6% | 73.8% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.79 | 69.0 | 6.28e-01 | 100.0% | 80.3% |
| 2pusA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 62.0 | 5.97e-01 | 95.6% | 75.5% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.78 | 65.0 | 5.50e-01 | 100.0% | 88.9% |
| 2qwoB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.77 | 67.0 | 5.34e-01 | 100.0% | 48.9% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.75 | 65.0 | 5.86e-01 | 100.0% | 70.3% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 65.0 | 5.83e-01 | 100.0% | 76.6% |
| 1b04A03 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 62.0 | 5.72e-01 | 100.0% | 71.0% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.75 | 60.0 | 5.26e-01 | 95.6% | 67.6% |
| 7eu3E01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 62.0 | 5.12e-01 | 100.0% | 50.6% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.74 | 62.0 | 5.82e-01 | 100.0% | 77.6% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.73 | 61.0 | 3.92e-01 | 100.0% | 19.7% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 60.0 | 5.33e-01 | 100.0% | 73.2% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.71 | 57.0 | 4.42e-01 | 97.8% | 73.2% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.70 | 56.0 | 4.50e-01 | 93.3% | 45.3% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 56.0 | 5.45e-01 | 95.6% | 100.0% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 57.0 | 4.98e-01 | 100.0% | 59.5% |
| 2bduA02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.69 | 57.0 | 5.03e-01 | 100.0% | 66.2% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.69 | 58.0 | 5.06e-01 | 100.0% | 78.4% |
| 2v0xA01 | 1.10.287.3160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 55.0 | 3.91e-01 | 100.0% | 42.9% |
| 4iw9A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 57.0 | 4.40e-01 | 100.0% | 44.2% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.68 | 59.0 | 4.45e-01 | 100.0% | 40.7% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 55.0 | 4.81e-01 | 100.0% | 57.7% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.67 | 55.0 | 4.69e-01 | 95.6% | 55.3% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 56.0 | 4.98e-01 | 100.0% | 73.5% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 52.0 | 4.64e-01 | 100.0% | 62.0% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.64 | 52.0 | 4.45e-01 | 97.8% | 64.6% |
| 3eo8A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 53.0 | 3.42e-01 | 100.0% | 19.6% |
| 1mhyG01 | 1.20.1280.10 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 | 0.63 | 55.0 | 4.83e-01 | 100.0% | 66.2% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 49.0 | 3.82e-01 | 97.8% | 36.1% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.62 | 48.0 | 3.72e-01 | 100.0% | 35.5% |
| 3w15B00 | 6.10.280.230 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 54.0 | 4.61e-01 | 100.0% | 68.1% |
| 2x6hA03 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.59 | 49.0 | 3.30e-01 | 97.8% | 35.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3249513 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.88 | 77.0 | 7.48e-01 | 95.6% | 100.0% |
| 5045370 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.85 | 77.0 | 6.93e-01 | 100.0% | 81.7% |
| 3544617 | 1008.1.1.0 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain | 0.85 | 75.0 | 6.47e-01 | 100.0% | 70.0% |
| 3769844 | 4.1.1.310 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26050 | 0.85 | 75.0 | 5.14e-01 | 100.0% | 30.0% |
| 4072921 | 192.5.1.20 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Val_tRNA-synt_C | 0.84 | 76.0 | 6.51e-01 | 100.0% | 75.4% |
| 3521328 | 192.10.1.5 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › Helical_CED_Drosha | 0.84 | 75.0 | 6.81e-01 | 100.0% | 75.0% |
| 3606827 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.84 | 72.0 | 7.02e-01 | 95.6% | 100.0% |
| 3283655 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.84 | 72.0 | 7.04e-01 | 97.8% | 96.0% |
| 4961961 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.84 | 74.0 | 6.24e-01 | 100.0% | 60.0% |
| 3186805 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.82 | 73.0 | 6.26e-01 | 100.0% | 74.3% |
| 4988178 | 633.29.1.0 ↗ | alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 | 0.82 | 72.0 | 5.63e-01 | 100.0% | 47.4% |
| 4025064 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.81 | 71.0 | 6.31e-01 | 100.0% | 69.2% |
| 4000037 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.81 | 70.0 | 6.36e-01 | 97.8% | 96.7% |
| 3387484 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.80 | 69.0 | 5.67e-01 | 100.0% | 61.2% |
| 5039030 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.79 | 68.0 | 6.45e-01 | 100.0% | 81.8% |
| 3509997 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.78 | 67.0 | 4.36e-01 | 100.0% | 63.4% |
| 3700089 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 67.0 | 6.00e-01 | 100.0% | 73.8% |
| 3227134 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.75 | 63.0 | 4.82e-01 | 100.0% | 40.9% |
| 3485413 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.74 | 64.0 | 6.26e-01 | 100.0% | 96.0% |
| 3592036 | 3291.1.1.16 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Flagellar_rod | 0.74 | 61.0 | 4.01e-01 | 100.0% | 23.8% |
| 2893266 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.72 | 60.0 | 4.88e-01 | 100.0% | 52.2% |
| 4375086 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.68 | 56.0 | 5.31e-01 | 95.6% | 83.6% |
| 3323995 | 3652.1.1.3 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 › PF26575 | 0.68 | 53.0 | 4.95e-01 | 100.0% | 69.2% |
| 3288178 | 5044.1.1.0 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like | 0.66 | 53.0 | 4.98e-01 | 100.0% | 73.3% |
| 3698336 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.66 | 52.0 | 4.46e-01 | 100.0% | 52.9% |
| 3696570 | 192.15.1.128 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › ATG9 | 0.65 | 54.0 | 4.18e-01 | 100.0% | 48.7% |
| 3489743 | 192.14.1.0 ↗ | alpha bundles › Long alpha-hairpin › Siah interacting protein N terminal domain-like › Siah interacting protein N terminal domain-like | 0.65 | 51.0 | 5.40e-01 | 100.0% | 100.0% |
| 3201946 | 3718.1.1.8 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › Fung_rhodopsin | 0.63 | 52.0 | 4.12e-01 | 100.0% | 44.5% |
| 4998576 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.62 | 54.0 | 4.61e-01 | 100.0% | 84.0% |
| 3518425 | 1021.1.1.1 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › OB_NTP_bind | 0.60 | 44.0 | 3.14e-01 | 86.7% | 23.6% |