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MK448877.1__QBX24960.1__Javan220_0056__00056

Bact-Vir

MK448877.1__QBX24960.1__Javan220_0056__00056

Identity

Accession:
MK448877 ↗
Kingdom:
phage

Quality

96.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan220

TaxID: 2548052

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-58
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24313.2 best Paratox 96.6 7.50e-28 100.0% 93.2%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oi0A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 55.0 4.47e-01 100.0% 90.7%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.62 49.0 4.70e-01 90.9% 81.8%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 40.0 3.54e-01 74.5% 77.5%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.58 42.0 4.16e-01 83.6% 80.3%
3vpbA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 39.0 3.76e-01 100.0% 60.9%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 49.0 3.83e-01 100.0% 54.8%
1t8rA01 3.30.1730.10 Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain 0.57 40.0 2.93e-01 74.5% 67.5%
7ob9B02 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.55 46.0 3.75e-01 92.7% 94.1%
1ci9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 40.0 2.44e-01 81.8% 92.3%
6tfjA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 36.0 2.92e-01 70.9% 43.5%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 43.0 2.69e-01 98.2% 87.1%
3o5yB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 34.0 2.58e-01 90.9% 23.8%
6kjhA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 43.0 2.73e-01 98.2% 91.4%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 40.0 3.26e-01 96.4% 77.5%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 37.0 2.83e-01 78.2% 33.6%
5tgfD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 37.0 2.37e-01 80.0% 88.6%
6genR01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 40.0 3.53e-01 94.5% 69.1%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 2.76e-01 85.5% 61.2%
3i7jA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 43.0 2.81e-01 100.0% 57.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2486933 7032.1.1.1 ↗ a+b two layers › Paratox › Paratox › Paratox › Paratox 0.97 93.0 8.48e-01 100.0% 82.4%
5005708 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.70 48.0 3.37e-01 72.7% 25.0%
5081513 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.65 44.0 3.52e-01 72.7% 37.5%
3603449 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.65 47.0 3.59e-01 80.0% 37.0%
4935087 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.64 47.0 3.63e-01 80.0% 39.2%
5044089 3769.1.1.0 ↗ 0.64 45.0 4.70e-01 76.4% 92.0%
5069452 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.64 47.0 3.62e-01 80.0% 38.5%
4984919 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.64 47.0 3.48e-01 80.0% 35.2%
4944445 3769.1.1.0 ↗ 0.63 45.0 4.83e-01 78.2% 97.8%
3450544 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 44.0 3.85e-01 72.7% 68.2%
5051445 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.63 46.0 3.54e-01 80.0% 40.0%
4941311 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.61 48.0 3.76e-01 87.3% 74.2%
5034089 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.61 44.0 3.48e-01 80.0% 37.6%
4161586 11.1.1.838 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF5305 0.60 41.0 2.94e-01 70.9% 50.3%
4937430 3769.1.1.0 ↗ 0.59 42.0 4.52e-01 76.4% 97.8%
3480669 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.59 50.0 3.80e-01 100.0% 68.5%
4999970 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.58 42.0 3.31e-01 81.8% 35.6%
4335762 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.57 38.0 4.10e-01 72.7% 84.4%
4980837 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.55 42.0 3.40e-01 89.1% 70.0%
5000757 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.55 44.0 3.58e-01 96.4% 71.7%
3957374 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.50 35.0 3.27e-01 87.3% 57.1%