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MK448889.1__QBX25522.1__Javan262_0007__00027
Bact-VirMK448889.1__QBX25522.1__Javan262_0007__00027
Identity
- Accession:
- MK448889 ↗
- Kingdom:
- phage
Quality
95.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-121
Domain cluster:
rep: OR553891.1__WNN93666.1__SEA_CALLINALLBARBZ_16__00016__D4-124
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05895.18 best | DUF859 | 217.2 | 6.40e-64 | 100.0% | 19.2% |
D2
high
residues 129-218
Domain cluster:
rep: KX961630.1__AOZ62007.1__QCM8_89__00086__D127-227
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05895.18 best | DUF859 | 124.1 | 9.50e-36 | 100.0% | 14.2% |
D3
high
residues 226-325
Domain cluster:
rep: NC_028805.1__YP_009199102.1__AVV11_gp150__00041__D695-776
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05895.18 best | DUF859 | 145.0 | 4.60e-42 | 100.0% | 16.0% |
D4
medium
residues 331-363
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05895.18 best | DUF859 | 32.9 | 3.80e-08 | 100.0% | 5.3% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dw9A02 | 3.30.1160.10 | Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain | 0.72 | 53.0 | 4.37e-01 | 90.9% | 41.2% |
| 3zjbA00 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.65 | 45.0 | 2.82e-01 | 72.7% | 41.9% |
| 6ap4B02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.63 | 46.0 | 3.13e-01 | 81.8% | 19.1% |
| 1orvA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.63 | 43.0 | 2.43e-01 | 78.8% | 5.3% |
| 3ef0A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.59 | 41.0 | 2.66e-01 | 84.8% | 55.8% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 46.0 | 3.54e-01 | 75.8% | 30.9% |
| 2xfvA00 | 3.10.260.30 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › | 0.57 | 41.0 | 2.98e-01 | 75.8% | 23.1% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.57 | 43.0 | 2.46e-01 | 93.9% | 7.6% |
| 1s7mA02 | 3.90.1780.10 | Alpha Beta › Alpha-Beta Complex › Trimeric adhesin › Trimeric adhesin | 0.54 | 37.0 | 2.83e-01 | 72.7% | 26.7% |
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.52 | 36.0 | 3.00e-01 | 78.8% | 98.7% |
| 2x24A03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.52 | 36.0 | 2.22e-01 | 100.0% | 37.9% |
| 4aqsA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 35.0 | 2.22e-01 | 78.8% | 10.4% |
| 4l1nA00 | 2.40.128.660 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 | 0.52 | 35.0 | 2.40e-01 | 72.7% | 14.9% |
| 1uyvB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 37.0 | 2.32e-01 | 100.0% | 35.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3469919 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.73 | 49.0 | 3.75e-01 | 75.8% | 30.7% |
| 4979991 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 52.0 | 3.74e-01 | 78.8% | 29.0% |
| 5060353 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.67 | 47.0 | 2.90e-01 | 72.7% | 12.7% |
| 3418511 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.66 | 47.0 | 4.24e-01 | 78.8% | 82.0% |
| 3684154 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.64 | 48.0 | 3.67e-01 | 75.8% | 33.8% |
| 4024904 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 46.0 | 3.19e-01 | 78.8% | 23.5% |
| 3484523 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.61 | 41.0 | 2.45e-01 | 75.8% | 7.6% |
| 3224634 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.60 | 45.0 | 2.67e-01 | 100.0% | 28.9% |
| 3725795 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.60 | 44.0 | 3.10e-01 | 84.8% | 66.2% |
| 3505737 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.58 | 41.0 | 3.14e-01 | 78.8% | 27.4% |
| 3193676 | 5.1.5.222 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Med16_N | 0.57 | 43.0 | 2.44e-01 | 93.9% | 7.0% |
| 4871776 | 4019.1.1.0 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins | 0.57 | 39.0 | 3.68e-01 | 72.7% | 53.3% |
| 4021761 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 41.0 | 2.27e-01 | 75.8% | 5.0% |
| 2724175 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.57 | 47.0 | 2.83e-01 | 100.0% | 23.1% |
| 3601963 | 6070.1.1.0 ↗ | few secondary structure elements › Sortilin C-terminal domain › Sortilin C-terminal domain › Sortilin C-terminal domain | 0.55 | 39.0 | 3.82e-01 | 81.8% | 77.5% |
| 3257433 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 37.0 | 2.66e-01 | 75.8% | 18.5% |
| 3227441 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.54 | 38.0 | 3.20e-01 | 72.7% | 40.0% |
| 3754841 | 2498.1.1.5 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N | 0.53 | 36.0 | 2.02e-01 | 81.8% | 22.3% |
| 4943515 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.52 | 37.0 | 2.39e-01 | 100.0% | 17.6% |
| 3518306 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.50 | 34.0 | 2.14e-01 | 100.0% | 34.8% |