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MK448890.1__QBX25549.1__Javan264_0001__00001
Bact-VirMK448890.1__QBX25549.1__Javan264_0001__00001
Identity
- Accession:
- MK448890 ↗
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-58
Domain cluster:
representative
CATH (54)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.74 | 59.0 | 5.35e-01 | 91.2% | 64.6% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.73 | 63.0 | 5.18e-01 | 96.5% | 66.7% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.73 | 50.0 | 4.84e-01 | 84.2% | 63.1% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.72 | 60.0 | 5.24e-01 | 100.0% | 61.6% |
| 1neiA00 | 3.30.160.220 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG | 0.71 | 58.0 | 5.80e-01 | 91.2% | 88.3% |
| 4g3vA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.71 | 60.0 | 4.43e-01 | 100.0% | 45.7% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.68 | 57.0 | 5.29e-01 | 98.2% | 73.0% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.66 | 45.0 | 3.43e-01 | 71.9% | 33.3% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.66 | 45.0 | 3.44e-01 | 71.9% | 34.1% |
| 1stzA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.65 | 57.0 | 4.26e-01 | 100.0% | 44.3% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 46.0 | 3.46e-01 | 75.4% | 44.5% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.64 | 46.0 | 2.93e-01 | 87.7% | 15.1% |
| 1pguA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 44.0 | 2.77e-01 | 73.7% | 21.6% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 52.0 | 4.34e-01 | 100.0% | 53.5% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 46.0 | 4.04e-01 | 80.7% | 60.4% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.63 | 49.0 | 3.66e-01 | 84.2% | 45.8% |
| 2uvaG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 43.0 | 3.28e-01 | 71.9% | 32.4% |
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.62 | 46.0 | 3.40e-01 | 82.5% | 45.2% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.61 | 42.0 | 3.90e-01 | 84.2% | 54.5% |
| 2x8fA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.61 | 53.0 | 3.30e-01 | 98.2% | 20.0% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.61 | 50.0 | 3.97e-01 | 96.5% | 43.2% |
| 2ex2A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 50.0 | 3.41e-01 | 100.0% | 24.1% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 41.0 | 3.99e-01 | 77.2% | 64.2% |
| 2i1yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 51.0 | 3.22e-01 | 96.5% | 72.5% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 43.0 | 2.88e-01 | 80.7% | 83.3% |
| 4a55A01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 44.0 | 2.90e-01 | 91.2% | 16.5% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 42.0 | 3.06e-01 | 78.9% | 39.9% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.58 | 35.0 | 3.04e-01 | 71.9% | 37.0% |
| 3hhmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 44.0 | 3.48e-01 | 91.2% | 36.2% |
| 3iwgA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 47.0 | 3.57e-01 | 93.0% | 63.0% |
| 2bjoA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.56 | 39.0 | 3.30e-01 | 71.9% | 79.8% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 49.0 | 3.07e-01 | 100.0% | 27.0% |
| 7szeB02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.56 | 48.0 | 3.45e-01 | 100.0% | 78.8% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.56 | 40.0 | 3.14e-01 | 93.0% | 33.1% |
| 1x67A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 40.0 | 3.19e-01 | 89.5% | 34.6% |
| 1dzkA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 41.0 | 3.08e-01 | 80.7% | 86.5% |
| 2kt4B01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 40.0 | 3.17e-01 | 84.2% | 50.7% |
| 2r39A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 3.81e-01 | 100.0% | 76.1% |
| 4dy0B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 48.0 | 3.71e-01 | 100.0% | 59.4% |
| 1vkcA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 45.0 | 3.46e-01 | 93.0% | 76.3% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.54 | 46.0 | 3.35e-01 | 96.5% | 69.1% |
| 2kczA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 41.0 | 3.07e-01 | 86.0% | 93.5% |
| 4aqsA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 39.0 | 2.67e-01 | 82.5% | 62.9% |
| 1t3yA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 44.0 | 3.51e-01 | 100.0% | 81.7% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 36.0 | 2.56e-01 | 70.2% | 56.0% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 38.0 | 3.65e-01 | 82.5% | 92.0% |
| 1cjxB02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 46.0 | 3.22e-01 | 100.0% | 94.1% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 39.0 | 3.44e-01 | 82.5% | 57.0% |
| 1fl7D00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.53 | 41.0 | 3.41e-01 | 87.7% | 58.5% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 40.0 | 3.32e-01 | 84.2% | 72.8% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.37e-01 | 96.5% | 58.0% |
| 5a2fA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.50e-01 | 98.2% | 80.4% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 38.0 | 3.00e-01 | 89.5% | 44.3% |
| 3rhtA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.50 | 41.0 | 2.72e-01 | 91.2% | 96.4% |
ECOD (79)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5050683 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.80 | 67.0 | 5.15e-01 | 100.0% | 42.4% |
| 4058654 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.79 | 68.0 | 5.59e-01 | 96.5% | 54.5% |
| 4214888 | 330.3.1.1 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 | 0.75 | 66.0 | 5.48e-01 | 100.0% | 71.0% |
| 222972 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.74 | 59.0 | 5.14e-01 | 91.2% | 57.3% |
| 4120507 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.73 | 48.0 | 4.07e-01 | 73.7% | 41.1% |
| 3937984 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.73 | 64.0 | 5.27e-01 | 100.0% | 55.0% |
| 5053632 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.73 | 63.0 | 4.97e-01 | 100.0% | 46.4% |
| 4524129 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.73 | 63.0 | 5.40e-01 | 100.0% | 63.2% |
| 3194095 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.73 | 65.0 | 5.46e-01 | 100.0% | 62.1% |
| 4985406 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.73 | 49.0 | 4.37e-01 | 70.2% | 100.0% |
| 3588192 | 4325.1.1.7 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 | 0.72 | 57.0 | 6.04e-01 | 89.5% | 100.0% |
| 4054729 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.72 | 59.0 | 5.43e-01 | 96.5% | 69.3% |
| 3992783 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.72 | 52.0 | 3.36e-01 | 75.4% | 18.8% |
| 4971888 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.72 | 63.0 | 4.17e-01 | 100.0% | 30.9% |
| 3472467 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.72 | 59.0 | 5.39e-01 | 91.2% | 70.7% |
| 4216680 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.72 | 57.0 | 4.86e-01 | 96.5% | 53.8% |
| 3404964 | 221.13.1.0 ↗ | a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain | 0.71 | 62.0 | 4.96e-01 | 100.0% | 49.6% |
| 3924626 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.70 | 59.0 | 5.22e-01 | 100.0% | 64.7% |
| 3780194 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.70 | 60.0 | 3.91e-01 | 100.0% | 22.4% |
| 4043415 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 60.0 | 3.52e-01 | 100.0% | 12.0% |
| 3235699 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 59.0 | 4.73e-01 | 100.0% | 47.8% |
| 3585861 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 60.0 | 4.48e-01 | 100.0% | 39.3% |
| 4297447 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 59.0 | 4.47e-01 | 100.0% | 39.3% |
| 4929017 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.69 | 57.0 | 4.42e-01 | 91.2% | 96.0% |
| 3565104 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 59.0 | 3.28e-01 | 100.0% | 6.5% |
| 3707615 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.69 | 59.0 | 4.27e-01 | 96.5% | 70.0% |
| 3334247 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.69 | 60.0 | 4.90e-01 | 100.0% | 54.5% |
| 3934156 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 46.0 | 3.72e-01 | 70.2% | 41.7% |
| 4928623 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.69 | 57.0 | 3.94e-01 | 91.2% | 63.2% |
| 5001130 | 101.1.2.44 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 | 0.68 | 46.0 | 3.82e-01 | 70.2% | 80.0% |
| 3931594 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 56.0 | 4.91e-01 | 100.0% | 61.1% |
| 4027196 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.67 | 57.0 | 4.82e-01 | 100.0% | 56.0% |
| 4004011 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 56.0 | 4.65e-01 | 100.0% | 53.6% |
| 5023443 | 330.4.1.0 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain | 0.65 | 50.0 | 4.81e-01 | 94.7% | 73.8% |
| 3639738 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.64 | 49.0 | 4.66e-01 | 82.5% | 73.1% |
| 5042035 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.64 | 53.0 | 3.67e-01 | 100.0% | 33.9% |
| 4024738 | 220.1.1.243 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30062 | 0.63 | 45.0 | 3.68e-01 | 75.4% | 50.5% |
| 5029914 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.63 | 49.0 | 4.99e-01 | 87.7% | 94.5% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.62 | 48.0 | 4.37e-01 | 89.5% | 62.0% |
| 4036906 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.61 | 46.0 | 4.25e-01 | 91.2% | 61.3% |
| 3696336 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 45.0 | 3.88e-01 | 80.7% | 69.5% |
| 3600626 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 44.0 | 3.78e-01 | 80.7% | 52.0% |
| 3938203 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 52.0 | 3.25e-01 | 96.5% | 32.6% |
| 4935472 | 330.4.1.0 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain | 0.60 | 47.0 | 4.52e-01 | 96.5% | 75.7% |
| 3058947 | 221.1.1.8 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd | 0.60 | 41.0 | 3.33e-01 | 77.2% | 35.3% |
| 4003909 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.59 | 46.0 | 3.31e-01 | 86.0% | 30.9% |
| 3944961 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.59 | 44.0 | 3.02e-01 | 86.0% | 33.9% |
| 4020396 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.59 | 52.0 | 4.49e-01 | 98.2% | 87.8% |
| 4930552 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.57 | 52.0 | 4.62e-01 | 100.0% | 95.0% |
| 3484809 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.57 | 43.0 | 3.24e-01 | 80.7% | 74.3% |
| 3479746 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.57 | 49.0 | 3.10e-01 | 96.5% | 71.5% |
| 3940677 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 44.0 | 3.13e-01 | 94.7% | 25.6% |
| 3412122 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.57 | 50.0 | 3.47e-01 | 100.0% | 85.1% |
| 3717169 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.56 | 49.0 | 3.42e-01 | 100.0% | 70.5% |
| 4945668 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.56 | 44.0 | 3.34e-01 | 86.0% | 94.3% |
| 4025734 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.56 | 46.0 | 3.20e-01 | 100.0% | 24.9% |
| 3238943 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 47.0 | 2.97e-01 | 98.2% | 30.9% |
| 4025160 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.55 | 44.0 | 3.49e-01 | 91.2% | 76.0% |
| 4029815 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 39.0 | 3.11e-01 | 77.2% | 36.9% |
| 3236416 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.55 | 49.0 | 3.02e-01 | 100.0% | 29.2% |
| 3193088 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.55 | 39.0 | 2.36e-01 | 77.2% | 15.3% |
| 4213219 | 109.21.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | 0.55 | 46.0 | 2.53e-01 | 91.2% | 38.7% |
| 3579667 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.54 | 44.0 | 3.39e-01 | 91.2% | 50.4% |
| 3212521 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 44.0 | 2.71e-01 | 89.5% | 66.1% |
| 3722239 | 2003.1.2.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 | 0.54 | 47.0 | 2.80e-01 | 98.2% | 46.4% |
| 3994884 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 44.0 | 2.83e-01 | 96.5% | 39.4% |
| 5062817 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.53 | 45.0 | 3.44e-01 | 93.0% | 100.0% |
| 3740226 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.53 | 48.0 | 2.78e-01 | 98.2% | 85.0% |
| 3923319 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.53 | 43.0 | 2.94e-01 | 96.5% | 36.2% |
| 5009939 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 46.0 | 3.72e-01 | 98.2% | 91.4% |
| 3255162 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.51 | 40.0 | 3.31e-01 | 91.2% | 67.8% |
| 5051838 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.51 | 42.0 | 3.27e-01 | 94.7% | 99.3% |
| None | — | 0.51 | 44.0 | 2.47e-01 | 96.5% | 20.8% | |
| 4974067 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.51 | 43.0 | 3.19e-01 | 94.7% | 92.9% |
| 4464235 | 295.1.1.30 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Cyto_heme_lyase | 0.51 | 39.0 | 2.93e-01 | 91.2% | 52.8% |
| 3767941 | 220.1.1.115 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 | 0.51 | 35.0 | 2.86e-01 | 75.4% | 51.5% |
| 3228385 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.51 | 40.0 | 2.34e-01 | 91.2% | 12.9% |
| 5053463 | 5.1.5.231 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › SBBP | 0.51 | 42.0 | 2.78e-01 | 100.0% | 25.6% |
| 4018584 | 6155.1.1.15 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 | 0.50 | 46.0 | 3.34e-01 | 100.0% | 61.3% |
D2
high
residues 65-144
Domain cluster:
rep: IMGVR_UViG_3300021488_000008-3300021488-Ga0190305_100017515__D59-140
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14659.13 best | Phage_int_SAM_3 | 31.4 | 2.60e-07 | 70.0% | 96.5% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kd1A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.86 | 79.0 | 6.85e-01 | 100.0% | 70.3% |
| 2kobA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.84 | 77.0 | 7.35e-01 | 100.0% | 86.0% |
| 2khvA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.81 | 74.0 | 7.30e-01 | 100.0% | 96.5% |
| 1x3kA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.71 | 51.0 | 4.18e-01 | 76.2% | 97.3% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.64 | 44.0 | 3.95e-01 | 71.2% | 68.1% |
| 8cdaC01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.64 | 45.0 | 4.01e-01 | 73.8% | 62.4% |
| 5gj7A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.64 | 44.0 | 3.84e-01 | 72.5% | 57.6% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 50.0 | 4.10e-01 | 87.5% | 98.7% |
| 3vibA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 42.0 | 3.26e-01 | 77.5% | 42.0% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 42.0 | 4.44e-01 | 100.0% | 92.8% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 38.0 | 2.66e-01 | 71.2% | 83.8% |
| 6klvB00 | 1.20.810.10 | Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C | 0.55 | 41.0 | 2.71e-01 | 81.2% | 36.7% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.55 | 39.0 | 4.31e-01 | 98.8% | 98.4% |
| 3ungC04 | 1.20.120.1260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-Cas system, Cmr2 subunit, D4 domain, six-helix bundle | 0.55 | 42.0 | 4.05e-01 | 92.5% | 72.2% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 38.0 | 3.89e-01 | 100.0% | 77.3% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.54 | 34.0 | 3.55e-01 | 100.0% | 69.3% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.54 | 47.0 | 3.75e-01 | 98.8% | 80.5% |
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 41.0 | 3.65e-01 | 86.3% | 81.1% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.52 | 42.0 | 4.09e-01 | 100.0% | 77.3% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 44.0 | 3.91e-01 | 96.2% | 83.3% |
| 2ra1A02 | 1.20.58.780 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 38.0 | 4.03e-01 | 98.8% | 94.1% |
| 7vkcA01 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.51 | 45.0 | 3.57e-01 | 98.8% | 76.4% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4663744 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.97 | 93.0 | 8.13e-01 | 100.0% | 72.7% |
| 3587101 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.91 | 86.0 | 7.71e-01 | 100.0% | 80.0% |
| 4004484 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.91 | 85.0 | 7.40e-01 | 100.0% | 83.5% |
| 3964236 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.90 | 84.0 | 7.20e-01 | 100.0% | 68.3% |
| 3957640 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.89 | 83.0 | 7.62e-01 | 100.0% | 80.0% |
| 3589750 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.89 | 84.0 | 7.51e-01 | 100.0% | 76.2% |
| 4009383 | 186.1.1.3 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_5 | 0.88 | 82.0 | 7.17e-01 | 100.0% | 83.5% |
| 170034 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.86 | 79.0 | 7.03e-01 | 100.0% | 75.5% |
| 4004726 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.85 | 79.0 | 6.89e-01 | 100.0% | 70.4% |
| 136582 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.84 | 77.0 | 7.15e-01 | 100.0% | 80.0% |
| 3839994 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.70 | 48.0 | 3.50e-01 | 71.2% | 39.1% |
| 3280266 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.69 | 48.0 | 4.23e-01 | 72.5% | 55.8% |
| 4106131 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.66 | 35.0 | 3.19e-01 | 97.5% | 40.0% |
| 3807769 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 54.0 | 5.22e-01 | 98.8% | 83.3% |
| 2114338 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.63 | 43.0 | 3.81e-01 | 72.5% | 59.0% |
| 3489734 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.62 | 35.0 | 3.57e-01 | 88.7% | 55.0% |
| 3941457 | 1203.1.2.3 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › YiaAB | 0.61 | 51.0 | 4.50e-01 | 92.5% | 86.7% |
| 3449702 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.60 | 52.0 | 3.86e-01 | 100.0% | 47.3% |
| 5013474 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.58 | 43.0 | 3.16e-01 | 80.0% | 66.4% |
| 4971381 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.58 | 42.0 | 3.64e-01 | 98.8% | 49.6% |
| 4575178 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.58 | 43.0 | 3.34e-01 | 96.2% | 34.6% |
| 4174856 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.57 | 42.0 | 3.04e-01 | 80.0% | 82.4% |
| 4997844 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.57 | 44.0 | 3.13e-01 | 85.0% | 56.2% |
| 5037933 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.56 | 40.0 | 2.89e-01 | 76.2% | 44.7% |
| 5060987 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.56 | 47.0 | 3.71e-01 | 97.5% | 86.5% |
| 4971189 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.56 | 42.0 | 2.97e-01 | 81.2% | 50.0% |
| 3968520 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.55 | 43.0 | 3.04e-01 | 85.0% | 49.8% |
| 4887725 | 2486.1.1.11 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_2 | 0.55 | 47.0 | 3.03e-01 | 100.0% | 31.8% |
| 3173369 | 5059.1.1.3 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT | 0.55 | 48.0 | 3.15e-01 | 97.5% | 46.5% |
| 3738358 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.54 | 38.0 | 3.90e-01 | 100.0% | 77.3% |
| 4995732 | 604.32.1.0 ↗ | alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY | 0.54 | 37.0 | 3.09e-01 | 70.0% | 85.7% |
| 3478235 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 44.0 | 3.83e-01 | 92.5% | 84.4% |
| 3992191 | 109.4.1.134 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPIN90_LRD | 0.53 | 36.0 | 3.37e-01 | 98.8% | 56.0% |
| 3648850 | 3567.1.1.93 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Tcp11 | 0.52 | 47.0 | 4.05e-01 | 100.0% | 64.8% |
| 4941211 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.52 | 43.0 | 3.18e-01 | 90.0% | 83.9% |
| 4971190 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.52 | 38.0 | 2.69e-01 | 78.8% | 61.1% |
| 4102866 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.52 | 40.0 | 2.95e-01 | 91.3% | 36.2% |
| 4937939 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.51 | 38.0 | 2.90e-01 | 81.2% | 60.3% |
| 3473220 | 5086.1.1.209 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › LIN9_C | 0.51 | 36.0 | 3.14e-01 | 100.0% | 50.4% |
| 3249530 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.51 | 40.0 | 3.46e-01 | 88.7% | 63.0% |
| 3580917 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.50 | 36.0 | 3.59e-01 | 77.5% | 75.3% |
D3
medium
residues 165-247
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.88 | 78.0 | 5.53e-01 | 94.0% | 40.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4522024 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.95 | 84.0 | 6.64e-01 | 92.8% | 50.7% |
| 3588110 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.90 | 76.0 | 6.21e-01 | 90.4% | 52.9% |
| 4659012 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.89 | 72.0 | 5.86e-01 | 94.0% | 49.0% |
| 1267972 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.89 | 76.0 | 5.93e-01 | 89.2% | 54.1% |
| 3954716 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 68.0 | 5.61e-01 | 94.0% | 49.3% |
| 4034079 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 70.0 | 5.84e-01 | 98.8% | 52.6% |
| 3589779 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 71.0 | 5.69e-01 | 91.6% | 48.7% |
| 4446668 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.85 | 65.0 | 5.33e-01 | 85.5% | 47.1% |
| 3588206 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 75.0 | 6.04e-01 | 98.8% | 52.7% |
| 4331898 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 61.0 | 5.92e-01 | 74.7% | 74.4% |
| 4137254 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 72.0 | 5.72e-01 | 98.8% | 49.0% |
| 3589594 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 73.0 | 5.77e-01 | 97.6% | 50.3% |
| 5083074 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 68.0 | 5.53e-01 | 98.8% | 49.3% |
| 4934303 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 59.0 | 6.15e-01 | 84.3% | 80.8% |
| 3289618 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.79 | 65.0 | 5.24e-01 | 89.2% | 49.7% |
| 3586881 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 63.0 | 5.13e-01 | 90.4% | 48.0% |
| 4134015 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 68.0 | 5.42e-01 | 94.0% | 51.0% |
| 3969115 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 63.0 | 5.73e-01 | 86.7% | 85.7% |
| 3959149 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.76 | 63.0 | 6.16e-01 | 90.4% | 85.6% |
| 4936284 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 62.0 | 5.48e-01 | 86.7% | 85.2% |
| 3941418 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.73 | 56.0 | 4.90e-01 | 80.7% | 85.8% |
| 4200953 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 64.0 | 5.17e-01 | 95.2% | 85.2% |
| 3943153 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.71 | 64.0 | 5.43e-01 | 96.4% | 86.2% |
| 3978568 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.71 | 61.0 | 5.15e-01 | 92.8% | 79.3% |
| 4981577 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 62.0 | 5.38e-01 | 95.2% | 80.8% |
| 4285602 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.69 | 61.0 | 5.20e-01 | 95.2% | 83.1% |
| 3942169 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.68 | 60.0 | 5.17e-01 | 95.2% | 83.2% |