←Back to structures
MK448892.1__QBX25674.1__Javan268_0030__00030
Bact-VirMK448892.1__QBX25674.1__Javan268_0030__00030
Identity
- Accession:
- MK448892 ↗
- Kingdom:
- phage
Quality
82.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-44
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.73 | 58.0 | 4.01e-01 | 95.5% | 39.1% |
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 56.0 | 4.95e-01 | 97.7% | 94.1% |
| 2x49A02 | 3.40.5.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › FHIPEP family, domain 2 | 0.67 | 45.0 | 4.40e-01 | 70.5% | 100.0% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.66 | 49.0 | 4.57e-01 | 81.8% | 68.4% |
| 1ileA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.64 | 47.0 | 3.10e-01 | 81.8% | 17.9% |
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.64 | 49.0 | 2.81e-01 | 88.6% | 16.8% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.63 | 43.0 | 3.81e-01 | 75.0% | 78.4% |
| 2w3sA04 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.63 | 45.0 | 3.48e-01 | 81.8% | 35.1% |
| 1pqsA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 44.0 | 3.77e-01 | 77.3% | 49.4% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 44.0 | 3.80e-01 | 79.5% | 68.4% |
| 1xjaB00 | 2.60.120.280 | Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC | 0.62 | 45.0 | 3.10e-01 | 79.5% | 22.1% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.61 | 43.0 | 3.72e-01 | 77.3% | 57.9% |
| 2cw8A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.61 | 44.0 | 3.03e-01 | 79.5% | 92.3% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.61 | 42.0 | 3.78e-01 | 75.0% | 81.2% |
| 1ff9A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.60 | 41.0 | 2.80e-01 | 72.7% | 27.0% |
| 2incA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.60 | 45.0 | 2.61e-01 | 88.6% | 17.5% |
| 1n8jA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 41.0 | 2.83e-01 | 79.5% | 49.5% |
| 2j58A02 | 3.10.560.10 | Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like | 0.59 | 41.0 | 3.34e-01 | 77.3% | 43.2% |
| 1g43A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.57 | 42.0 | 3.01e-01 | 88.6% | 38.1% |
| 3ttcA01 | 3.90.870.30 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › | 0.56 | 42.0 | 2.85e-01 | 88.6% | 89.8% |
| 4qglA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 41.0 | 2.94e-01 | 93.2% | 62.6% |
| 2mctA00 | 2.60.40.4250 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.15e-01 | 84.1% | 64.7% |
| 2ntxA01 | 1.20.58.2010 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 | 0.52 | 39.0 | 2.64e-01 | 90.9% | 52.9% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.52 | 37.0 | 2.59e-01 | 81.8% | 67.0% |
| 2p4zA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 35.0 | 2.24e-01 | 75.0% | 94.5% |
| 2i71A01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.50 | 37.0 | 2.44e-01 | 79.5% | 73.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3512155 | 560.1.1.3 ↗ | few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › DUF5648 | 0.87 | 68.0 | 5.16e-01 | 84.1% | 40.0% |
| 3407580 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.74 | 54.0 | 4.69e-01 | 79.5% | 52.9% |
| 3413459 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.74 | 54.0 | 5.26e-01 | 79.5% | 77.6% |
| 3410496 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.74 | 53.0 | 5.18e-01 | 77.3% | 77.1% |
| 3781851 | 5050.1.1.32 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn | 0.73 | 60.0 | 3.76e-01 | 93.2% | 18.4% |
| 3389045 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.72 | 53.0 | 5.09e-01 | 79.5% | 76.0% |
| 4451053 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.72 | 52.0 | 5.04e-01 | 79.5% | 76.0% |
| 3400250 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.70 | 52.0 | 5.06e-01 | 81.8% | 80.0% |
| 3218303 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.70 | 51.0 | 5.11e-01 | 79.5% | 80.0% |
| 3415578 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.70 | 51.0 | 4.92e-01 | 79.5% | 82.0% |
| 3397134 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.68 | 51.0 | 4.92e-01 | 81.8% | 80.0% |
| 3300493 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.68 | 49.0 | 3.31e-01 | 79.5% | 58.3% |
| 3415618 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.68 | 51.0 | 4.64e-01 | 81.8% | 70.0% |
| 3405249 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.68 | 50.0 | 4.80e-01 | 81.8% | 73.6% |
| 4461643 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.68 | 51.0 | 4.63e-01 | 81.8% | 70.0% |
| 3399988 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.68 | 48.0 | 4.61e-01 | 79.5% | 75.9% |
| 4977215 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.68 | 45.0 | 4.16e-01 | 70.5% | 95.0% |
| 4410550 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.67 | 50.0 | 4.84e-01 | 81.8% | 84.0% |
| 4268493 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.67 | 49.0 | 4.93e-01 | 81.8% | 86.7% |
| 3961155 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.67 | 47.0 | 3.41e-01 | 77.3% | 25.2% |
| 3400710 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.66 | 48.0 | 4.65e-01 | 79.5% | 76.0% |
| 5046846 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.66 | 43.0 | 2.97e-01 | 81.8% | 18.2% |
| 3959734 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 46.0 | 3.64e-01 | 77.3% | 34.7% |
| 3404255 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.65 | 48.0 | 4.67e-01 | 81.8% | 86.0% |
| 4585224 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.65 | 45.0 | 3.56e-01 | 75.0% | 56.1% |
| 3415617 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.64 | 47.0 | 4.55e-01 | 81.8% | 80.0% |
| 3405674 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.64 | 45.0 | 4.33e-01 | 79.5% | 74.5% |
| 3389539 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.64 | 47.0 | 4.68e-01 | 81.8% | 95.6% |
| 3289362 | 101.1.2.610 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH2_Lhr | 0.63 | 44.0 | 3.47e-01 | 77.3% | 32.4% |
| 3188180 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.63 | 43.0 | 2.58e-01 | 75.0% | 14.9% |
| 3595258 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 40.0 | 3.32e-01 | 72.7% | 38.9% |
| 4878090 | 4012.1.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › TOPRIM_C | 0.57 | 41.0 | 3.19e-01 | 84.1% | 56.0% |
| 3264411 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 39.0 | 3.43e-01 | 79.5% | 63.7% |
| 4031792 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.53 | 40.0 | 2.62e-01 | 86.4% | 24.8% |