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MK448896.1__QBX25882.1__Javan278_0034__00016

Bact-Vir

MK448896.1__QBX25882.1__Javan278_0034__00016

Identity

Accession:
MK448896 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan278

TaxID: 2548091

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-53
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5e1qB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 39.0 2.45e-01 78.0% 11.3%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.56 44.0 2.94e-01 97.6% 25.9%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.14e-01 97.6% 31.0%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 36.0 2.32e-01 78.0% 16.1%
3e07A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.52 38.0 3.32e-01 100.0% 44.4%
4c97A02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.00e-01 95.1% 34.3%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 2.75e-01 85.4% 51.9%
2jl6101 2.20.150.30 Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › 0.51 35.0 3.51e-01 92.7% 74.4%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.51 35.0 3.09e-01 78.0% 44.4%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.50 36.0 2.75e-01 82.9% 87.1%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 36.0 2.46e-01 87.8% 83.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4085003 7026.1.1.5 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.61 49.0 2.87e-01 100.0% 9.4%
3058416 1.1.5.39 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.59 41.0 3.09e-01 80.5% 48.0%
2323990 327.13.1.10 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › SpoIIIAG_C 0.56 43.0 3.18e-01 100.0% 39.6%
3425464 5.1.3.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.55 39.0 2.36e-01 92.7% 9.2%
3456292 2.1.1.134 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › GIDE 0.54 39.0 2.86e-01 87.8% 64.1%
4948954 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.20e-01 100.0% 73.9%
3787279 633.23.1.9 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.53 43.0 2.67e-01 100.0% 29.6%
5022577 304.51.1.7 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.52 39.0 2.75e-01 85.4% 96.4%
4230774 101.1.9.117 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.52 31.0 2.36e-01 87.8% 22.1%
3211918 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 40.0 2.88e-01 100.0% 61.9%
5030848 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 37.0 2.74e-01 90.2% 44.1%