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MK448896.1__QBX25883.1__Javan278_0035__00015

Bact-Vir

MK448896.1__QBX25883.1__Javan278_0035__00015

Identity

Accession:
MK448896 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 6.01e-01 98.1% 98.1%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.70 64.0 4.30e-01 100.0% 80.2%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.19e-01 100.0% 73.4%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.68 50.0 4.07e-01 82.7% 55.7%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 58.0 4.50e-01 100.0% 81.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 4.90e-01 100.0% 64.4%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.67 57.0 4.89e-01 100.0% 97.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 52.0 5.28e-01 98.1% 88.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.20e-01 100.0% 75.4%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.67 52.0 4.02e-01 86.5% 52.5%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 57.0 4.36e-01 100.0% 74.2%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 56.0 4.50e-01 100.0% 80.6%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 55.0 4.46e-01 100.0% 88.9%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 5.23e-01 100.0% 83.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 5.47e-01 100.0% 89.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 49.0 5.16e-01 94.2% 95.7%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.64 48.0 4.30e-01 86.5% 74.1%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 5.19e-01 100.0% 94.0%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.63 47.0 4.30e-01 90.4% 60.0%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 53.0 3.80e-01 100.0% 67.1%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 4.20e-01 100.0% 70.9%
4adiA02 3.30.67.20 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Rubella membrane glycoprotein E1, domain 2 0.63 53.0 4.58e-01 100.0% 70.5%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.63 55.0 3.40e-01 100.0% 34.4%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 53.0 4.50e-01 100.0% 64.1%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 4.59e-01 86.5% 70.8%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.62 52.0 3.22e-01 96.2% 25.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.18e-01 98.1% 94.9%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 52.0 5.15e-01 100.0% 92.6%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.62 52.0 3.87e-01 96.2% 61.3%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.98e-01 100.0% 84.7%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 50.0 3.67e-01 98.1% 88.3%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 53.0 3.27e-01 100.0% 34.9%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 46.0 4.11e-01 82.7% 94.7%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.24e-01 100.0% 54.2%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.60 49.0 3.91e-01 98.1% 94.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 50.0 4.68e-01 100.0% 82.1%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.69e-01 98.1% 90.3%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 48.0 3.06e-01 98.1% 91.4%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.59 44.0 3.77e-01 84.6% 47.8%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 47.0 3.87e-01 92.3% 78.4%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.58 47.0 4.27e-01 98.1% 68.8%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 3.44e-01 100.0% 61.5%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 42.0 3.46e-01 80.8% 90.6%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 3.56e-01 98.1% 73.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 3.93e-01 100.0% 68.1%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.52e-01 94.2% 100.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.47e-01 100.0% 98.0%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 48.0 3.87e-01 100.0% 97.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 3.97e-01 96.2% 73.4%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.22e-01 100.0% 50.3%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 41.0 3.03e-01 92.3% 89.0%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.37e-01 98.1% 92.8%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 41.0 4.08e-01 94.2% 82.1%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 43.0 3.02e-01 100.0% 68.8%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 39.0 2.43e-01 86.5% 44.0%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926624 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.80 66.0 6.71e-01 100.0% 94.0%
3622645 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.77 63.0 5.21e-01 100.0% 50.5%
682 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.77 63.0 5.19e-01 100.0% 50.5%
3507003 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 65.0 5.82e-01 100.0% 89.3%
3233672 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.73 64.0 5.17e-01 100.0% 52.0%
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 59.0 5.03e-01 100.0% 55.3%
3278853 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.80e-01 98.1% 83.1%
3474715 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.32e-01 100.0% 72.3%
3622846 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 57.0 5.82e-01 100.0% 94.0%
4000280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.55e-01 100.0% 85.5%
3733375 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.70 63.0 4.18e-01 100.0% 76.5%
3620094 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.50e-01 100.0% 85.5%
3224052 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.69 62.0 4.16e-01 100.0% 75.8%
3366726 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.69 62.0 4.10e-01 100.0% 76.0%
3519803 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.69 61.0 4.13e-01 100.0% 74.7%
5067227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.18e-01 100.0% 71.1%
3492371 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.68 60.0 4.06e-01 100.0% 74.7%
4028717 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.68 57.0 3.90e-01 100.0% 27.3%
3510526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.58e-01 100.0% 90.9%
3881117 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 57.0 4.67e-01 100.0% 51.0%
141833 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.67 56.0 4.91e-01 100.0% 98.8%
3511200 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.67 56.0 4.82e-01 98.1% 58.8%
4024671 4041.1.1.0 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.67 60.0 4.08e-01 100.0% 82.8%
3706577 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 57.0 4.33e-01 100.0% 80.8%
3541241 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.67 55.0 5.25e-01 100.0% 80.0%
3547106 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 56.0 4.75e-01 100.0% 56.7%
3840679 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 55.0 4.49e-01 100.0% 50.5%
3398093 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.66 54.0 5.22e-01 100.0% 80.0%
3830187 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 54.0 5.37e-01 100.0% 87.3%
4002896 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 54.0 4.57e-01 100.0% 53.3%
3547084 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 54.0 4.53e-01 100.0% 53.3%
3999723 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 53.0 3.86e-01 100.0% 32.0%
3913334 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 53.0 4.90e-01 100.0% 68.6%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 54.0 4.50e-01 100.0% 53.3%
5017214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.06e-01 100.0% 83.6%
3927330 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.65 53.0 4.52e-01 90.4% 77.6%
5065350 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 4.37e-01 100.0% 82.5%
3920666 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 53.0 4.45e-01 100.0% 53.3%
4030728 5.1.4.661 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.64 50.0 3.00e-01 84.6% 82.7%
3765274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.58e-01 100.0% 56.7%
3867284 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 54.0 3.13e-01 100.0% 18.7%
3881123 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 52.0 4.45e-01 100.0% 56.5%
3517728 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.63 52.0 4.74e-01 100.0% 68.6%
3938389 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 53.0 4.57e-01 100.0% 58.8%
4026957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.03e-01 100.0% 81.7%
4011604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 53.0 4.84e-01 100.0% 70.7%
4420340 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 51.0 5.00e-01 98.1% 88.3%
3535278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.91e-01 100.0% 80.0%
3387119 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 51.0 4.38e-01 94.2% 62.2%
3881119 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 49.0 4.41e-01 100.0% 60.0%
3217770 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.27e-01 100.0% 52.0%
3282977 300.1.1.12 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.62 52.0 3.63e-01 100.0% 81.5%
4583705 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 51.0 3.25e-01 100.0% 17.6%
3576128 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.03e-01 100.0% 46.1%
3801806 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.60 48.0 3.96e-01 100.0% 96.5%
3261235 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 51.0 4.42e-01 100.0% 61.2%
490 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 50.0 4.54e-01 100.0% 74.3%
185415 3459.1.1.1 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.59 44.0 3.77e-01 84.6% 47.8%
3239261 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 48.0 2.96e-01 100.0% 16.9%
3587744 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.58 49.0 3.71e-01 100.0% 73.6%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 49.0 4.62e-01 100.0% 81.5%
1100 10.1.1.32 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser 0.58 50.0 3.40e-01 100.0% 58.4%
4875314 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 46.0 3.75e-01 100.0% 45.0%
3266788 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.57 46.0 3.71e-01 100.0% 58.1%
3507107 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 46.0 2.92e-01 98.1% 86.7%
852 9.1.1.29 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.57 47.0 3.56e-01 98.1% 73.0%
3907175 719.1.1.3 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PAXX 0.57 45.0 3.85e-01 96.2% 70.0%
None 0.56 43.0 2.44e-01 96.2% 6.1%
3929759 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.56 41.0 2.82e-01 82.7% 21.4%
4029890 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 44.0 2.83e-01 98.1% 90.9%